Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OCCAAGHP_40 | 110255 | 110452 | CspA | 5.79e-28 | cold shock protein | 80.30 | 100.00 | CAA62903 |
| OCCAAGHP_40 | 110255 | 110449 | CspR | 2.51e-27 | cold shock protein | 81.54 | 98.48 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCCAAGHP_18 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_19 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_20 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_21 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_22 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_24 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_25 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_26 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_27 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_28 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_29 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_31 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_32 | 1.0 | 0.0 | 1.0 |
| OCCAAGHP_33 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_34 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_35 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_36 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_37 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_38 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_39 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_40 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_41 | 0.0 | 1.0 | 0.0 |
| OCCAAGHP_42 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCCAAGHP_32 | 931 | 20637 | False | Siphoviridae | VOG0703, VOG5924, VOG8917, VOG0648, VOG4599, VOG0727, VOG4545, VOG0725, VOG0799, VOG0724, VOG5660, VOG4713, VOG1319, VOG10914, VOG1300, VOG4564, VOG0720, VOG10227, VOG7312 |
| OCCAAGHP_37 | 54185 | 88891 | False | Siphoviridae | VOG3705, VOG6914, VOG4602, VOG8520, VOG8520, VOG2228, VOG0535, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG0198, VOG0686, VOG4841, VOG4581, VOG1886, VOG4556, VOG4568, VOG0204, VOG0205, VOG4317, VOG0207, VOG0209, VOG6163, VOG0801, VOG3462, VOG4025, VOG8438, VOG6243, VOG4705, VOG1637 |
| OCCAAGHP_41 | 247013 | 260708 | False | Myoviridae | VOG0083, VOG0382, VOG0384, VOG0205, VOG0226, VOG6085, VOG0025 |
Phigaro v2.4.0 (Database: Jan. 2024 release)