Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HBPCLBNC_1 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_2 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_3 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_4 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_5 | 1.0 | 0.0 | 1.0 |
| HBPCLBNC_6 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_7 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_8 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_9 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_10 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_11 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_12 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_13 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_14 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_15 | 1.0 | 0.0 | 1.0 |
| HBPCLBNC_16 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_17 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_18 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_19 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_20 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_21 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_22 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_23 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_24 | 0.0 | 1.0 | 0.0 |
| HBPCLBNC_25 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HBPCLBNC_2 | 206806 | 210983 | False | Siphoviridae | VOG0275, VOG1561, VOG4602, VOG9667, VOG0010, VOG4995, VOG10735 |
| HBPCLBNC_2 | 223595 | 252621 | False | Myoviridae | VOG0198, VOG8269, VOG0638, VOG4618, VOG1837, VOG7407, VOG1912, VOG5027, VOG1915, VOG1942, VOG4710, VOG1353, VOG1883, VOG1352, VOG4699, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG9945, VOG4705, VOG0861 |
| HBPCLBNC_2 | 378750 | 410438 | False | Myoviridae | VOG9945, VOG2170, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG4760, VOG4699, VOG1352, VOG1883, VOG4710, VOG1942, VOG1915, VOG5027, VOG1912, VOG7407, VOG1837, VOG4618, VOG0686, VOG8269, VOG0198, VOG6945, VOG0327, VOG2401 |
| HBPCLBNC_4 | 26659 | 31225 | False | Siphoviridae | VOG9875, VOG4799, VOG8288, VOG5458, VOG8288, VOG4566, VOG4603, VOG6495 |
| HBPCLBNC_5 | 11141 | 37654 | False | Myoviridae | VOG0686, VOG0796, VOG7407, VOG1912, VOG5027, VOG4865, VOG1915, VOG6932, VOG1942, VOG4778, VOG1353, VOG1881, VOG1883, VOG1352, VOG4699, VOG6307, VOG1956, VOG1433, VOG1348, VOG0573, VOG4550, VOG4691, VOG4620, VOG5334 |
| HBPCLBNC_12 | 8758 | 16807 | False | Siphoviridae | VOG0275, VOG4602, VOG8520, VOG8520, VOG4643, VOG2228, VOG9708, VOG0322, VOG6231 |
| HBPCLBNC_12 | 21153 | 48751 | False | Siphoviridae | VOG6965, VOG4966, VOG0327, VOG3349, VOG6005, VOG0198, VOG4581, VOG1886, VOG0202, VOG4556, VOG4573, VOG4553, VOG0204, VOG0205, VOG0207, VOG4586, VOG0209, VOG0660, VOG4545, VOG4633, VOG4659, VOG8355, VOG1594, VOG6540, VOG9945 |
Phigaro v2.4.0 (Database: Jan. 2024 release)