Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OCCBCOGA_8 | 1 | 681 | blaTEM-229 | Unknown Beta-lactam | 99.71 | 79.09 | MG821356 |
| OCCBCOGA_8 | 2505 | 3039 | blaTEM-116 | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.0 | 62.14 | AY425988 |
| OCCBCOGA_8 | 2505 | 3039 | blaTEM-157 | Amoxicillin, Ampicillin, Aztreonam, Cefepime, Cefotaxime, Ceftazidime, Ceftriaxone, Piperacillin, Ticarcillin | 100.00 | 62.14 | DQ909059 |
| OCCBCOGA_8 | 2505 | 3039 | blaTEM-162 | Unknown Beta-lactam | 100.00 | 62.14 | EF468463 |
| OCCBCOGA_8 | 2505 | 3039 | blaTEM-181 | Unknown Beta-lactam | 100.00 | 62.14 | KM977568 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OCCBCOGA_8 | 17 | 643 | blaTEM | TEM family class A beta-lactamase | PARTIALX | 100.00 | 73.08 | WP_000027050.1 |
| OCCBCOGA_8 | 2508 | 3038 | blaTEM | TEM family class A beta-lactamase | PARTIAL_CONTIG_ENDX | 100.00 | 61.89 | WP_000027050.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OCCBCOGA_8 | 1962 | 2092 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OCCBCOGA_2 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_3 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_4 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_7 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_8 | 1.0 | 0.0 | 1.0 |
| OCCBCOGA_12 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_14 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_15 | 1.0 | 0.0 | 1.0 |
| OCCBCOGA_17 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_19 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_20 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_22 | 1.0 | 0.0 | 1.0 |
| OCCBCOGA_24 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_25 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_26 | 1.0 | 0.0 | 1.0 |
| OCCBCOGA_27 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_29 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_30 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_33 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_35 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_36 | 0.0 | 1.0 | 0.0 |
| OCCBCOGA_37 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OCCBCOGA_27 | 94251 | 102420 | False | Siphoviridae | VOG0275, VOG9312, VOG0248, VOG9667, VOG4552, VOG2703, VOG0685, VOG0283, VOG4566, VOG3307 |
| OCCBCOGA_27 | 103397 | 130612 | False | Siphoviridae | VOG3307, VOG4693, VOG0198, VOG9702, VOG1422, VOG4618, VOG5532, VOG4544, VOG0691, VOG0692, VOG4555, VOG1329, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG4545, VOG0801, VOG4619, VOG9945, VOG4705, VOG0861, VOG9888, VOG0686, VOG0703 |
| OCCBCOGA_27 | 281967 | 285033 | True | Unknown | VOG0275, VOG0275, VOG0047, VOG0862, VOG9667 |
| OCCBCOGA_27 | 292197 | 316124 | False | Myoviridae | VOG0198, VOG4972, VOG1326, VOG1326, VOG1327, VOG1517, VOG4544, VOG0720, VOG4564, VOG4555, VOG4572, VOG4623, VOG3888, VOG1900, VOG4870, VOG5612, VOG3890, VOG3891, VOG3892, VOG3636, VOG4865, VOG4885, VOG3894, VOG4691, VOG4862 |
| OCCBCOGA_36 | 121735 | 126614 | False | Siphoviridae | VOG8520, VOG8520, VOG4602, VOG11003, VOG6179, VOG9500 |
Phigaro v2.4.0 (Database: Jan. 2024 release)