Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFHNFHNO_69 | 26365 | 28290 | tet(Q) | ARO:3000191 | tet(Q) | 97.66 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CFHNFHNO_156 | 4544 | 5538 | cfxA6 | Unknown Beta-lactam | 99.50 | 99.90 | GQ342996 |
| CFHNFHNO_69 | 26365 | 28290 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 97.46 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CFHNFHNO_126 | 93770 | 94279 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| CFHNFHNO_126 | 94307 | 95209 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | PARTIALX | 99.34 | 75.06 | WP_063853729.1 |
| CFHNFHNO_156 | 4547 | 5503 | cfxA6 | broad-spectrum class A beta-lactamase CfxA6 | BLASTX | 99.06 | 99.69 | WP_117664257.1 |
| CFHNFHNO_69 | 26368 | 28290 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.82 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CFHNFHNO_1 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_2 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_3 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_4 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_5 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_6 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_7 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_8 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_9 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_10 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_11 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_12 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_13 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_14 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_15 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_16 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_17 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_18 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_20 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_21 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_22 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_23 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_24 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_25 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_26 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_27 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_29 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_30 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_31 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_32 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_33 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_35 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_36 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_38 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_39 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_40 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_41 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_43 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_44 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_45 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_46 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_47 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_48 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_49 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_50 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_51 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_52 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_53 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_55 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_56 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_57 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_58 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_59 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_60 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_62 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_63 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_64 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_67 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_68 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_69 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_70 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_71 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_72 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_74 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_75 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_76 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_77 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_79 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_80 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_81 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_82 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_83 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_84 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_85 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_87 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_88 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_89 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_91 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_92 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_93 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_94 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_95 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_96 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_97 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_98 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_100 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_101 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_103 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_104 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_105 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_106 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_108 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_109 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_110 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_111 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_112 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_113 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_114 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_115 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_116 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_117 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_118 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_119 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_120 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_121 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_122 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_123 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_124 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_125 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_126 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_127 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_129 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_131 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_132 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_133 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_134 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_135 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_136 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_137 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_138 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_139 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_140 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_142 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_143 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_145 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_146 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_147 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_148 | 1.0 | 0.0 | 1.0 |
| CFHNFHNO_149 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_151 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_152 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_153 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_154 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_155 | 0.0 | 1.0 | 0.0 |
| CFHNFHNO_156 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CFHNFHNO_49 | 7103 | 14569 | False | Siphoviridae | VOG4589, |
| CFHNFHNO_124 | 32742 | 40735 | False | Siphoviridae | VOG9606, |
Phigaro v2.4.0 (Database: Jan. 2024 release)