Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709754 | 711331 | vgaD | ARO:3002832 | vgaD | 99.81 | 100.00 | GQ205627.1 |
| CJLMHLDA_4 | 709038 | 709688 | vatH | ARO:3002845 | vatH | 99.54 | 100.00 | GQ205627.2 |
| CJLMHLDA_4 | 505058 | 505552 | lnuC | ARO:3002837 | lnuC | 98.17 | 100.00 | AY928180.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709754 | 711331 | vga(D) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.87 | 100.00 | GQ205627 |
| CJLMHLDA_4 | 709038 | 709688 | vat(H) | Dalfopristin, Pristinamycin IIA, Virginiamycin M | 99.85 | 100.00 | GQ205627 |
| CJLMHLDA_4 | 505058 | 505552 | lnu(C) | Lincomycin | 99.19 | 100.00 | AY928180 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 709757 | 711331 | vga(D) | ABC-F type ribosomal protection protein Vga(D) | BLASTX | 99.81 | 100.00 | WP_063856938.1 |
| CJLMHLDA_4 | 709041 | 709688 | vat(H) | streptogramin A O-acetyltransferase Vat(H) | BLASTX | 99.54 | 100.00 | WP_063856935.1 |
| CJLMHLDA_4 | 505058 | 505549 | lnu(C) | lincosamide nucleotidyltransferase Lnu(C) | BLASTX | 98.17 | 100.00 | WP_063851341.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CJLMHLDA_4 | 847081 | 847788 | WalR | 5.83e-115 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CJLMHLDA_1 | 1.0 | 0.0 | 1.0 |
| CJLMHLDA_2 | 1.0 | 0.0 | 1.0 |
| CJLMHLDA_3 | 1.0 | 0.0 | 1.0 |
| CJLMHLDA_4 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CJLMHLDA_4 | 1160326 | 1193342 | False | Siphoviridae | VOG9667, VOG4552, VOG6238, VOG1638, VOG3478, VOG9747, VOG3947, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG4609, VOG0327, VOG9107, VOG0198, VOG0796, VOG10227, VOG0720, VOG4564, VOG10914, VOG4572, VOG4713, VOG0723, VOG5660, VOG0724, VOG0799, VOG0725, VOG0800, VOG4545, VOG4633, VOG5904, VOG5008, VOG0641, VOG8294 |
Phigaro v2.4.0 (Database: Jan. 2024 release)