Probiotic potential risk score


ARGs VFs PGs PPRS
4014.12

PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).

Antibiotic resistance genes


Comprehensive Antibiotic Resistance Database (CARD)

Query ID Begin End ARO name ARO accession CARD name Identity Coverage Accession no.
NMHGJOML_116558441656746cepAARO:3003559cepA99.00100.00U05883.1
NMHGJOML_2957563958363ErmFARO:3000498ErmF99.62100.00M17124.1
NMHGJOML_2951061952986tet(Q)ARO:3000191tet(Q)96.1097.56Z21523.1

RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)

ResFinder

Query ID Begin End Resistance gene Phenotype Identity Coverage Accession no.
NMHGJOML_2957563958363erm(F)Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S100.00100.00M17808
NMHGJOML_116558441656746cepAUnknown Beta-lactam99.78100.00U05887
NMHGJOML_2951061952986tet(Q)Doxycycline, Tetracycline, Minocycline96.83100.00X58717
NMHGJOML_117413801742330cfxA3Ampicillin86.1298.34AF472622

ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)

AMRFinderPlus

Query ID Begin End Gene symbol Sequence name Method Identity Coverage Accession no.
NMHGJOML_2957566958363erm(F)23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F)EXACTX100.00100.00WP_002682030.1
NMHGJOML_116558471656746cepACepA family extended-spectrum class A beta-lactamaseBLASTX99.33100.00WP_005816369.1
NMHGJOML_2951064952986tet(Q)tetracycline resistance ribosomal protection protein Tet(Q)BLASTX98.75100.00WP_063856409.1
NMHGJOML_117413781742331cfxA3extended-spectrum class A beta-lactamase CfxA3BLASTX83.6599.07WP_004348227.1

AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)

Virulence factors


Virulence Factor Database (VFDB)

Query ID qstart qend Gene name e-value VF name VF category Identity Coverage Accession no.
No hit found

BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)

VirulenceFinder

Query ID Begin End Database Virulence factor Protein function Identity Coverage Accession no.
No hit found

VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)

Pathogenic genes


PHI-base

Query ID qstart qend Gene name e-value Function Identity Coverage Gene ID
NMHGJOML_4413390411855GroEL0.0folding of newly synthesized proteins, preventing misfolding and aggregation80.0893.94BAA04222

BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)

Plasmid


PlasmidFinder

Query ID Begin End Plasmid Query / Template Identity Accession no.
No hit found

PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)

PlasmidHunter

Query ID Prediction Chromosome Plasmid
NMHGJOML_10.01.00.0
NMHGJOML_20.01.00.0
NMHGJOML_30.01.00.0
NMHGJOML_40.01.00.0
NMHGJOML_50.01.00.0
NMHGJOML_60.01.00.0
NMHGJOML_70.01.00.0
NMHGJOML_80.01.00.0
NMHGJOML_90.01.00.0
NMHGJOML_100.01.00.0
NMHGJOML_110.01.00.0
NMHGJOML_120.01.00.0
NMHGJOML_130.01.00.0
NMHGJOML_140.01.00.0
NMHGJOML_150.01.00.0
NMHGJOML_171.00.01.0
NMHGJOML_181.00.01.0
NMHGJOML_191.00.01.0
NMHGJOML_201.00.01.0
NMHGJOML_210.01.00.0
NMHGJOML_220.01.00.0
NMHGJOML_230.01.00.0
NMHGJOML_241.00.01.0
NMHGJOML_251.00.01.0
NMHGJOML_261.00.01.0
NMHGJOML_271.00.01.0
NMHGJOML_281.00.01.0
NMHGJOML_291.00.01.0
NMHGJOML_301.00.01.0
NMHGJOML_311.00.01.0
NMHGJOML_320.01.00.0
NMHGJOML_330.01.00.0
NMHGJOML_340.01.00.0
NMHGJOML_351.00.01.0
NMHGJOML_361.00.01.0
NMHGJOML_371.00.01.0
NMHGJOML_380.01.00.0
NMHGJOML_390.01.00.0
NMHGJOML_401.00.01.0

PlasmidHunter v 1.4.5 (Database: May. 2024 release)

Prophage


Phigaro

Query ID Begin End Transposable Taxonomy pVOGs
NMHGJOML_3470673482663FalseUnknownVOG0572,
NMHGJOML_43846054315FalseSiphoviridaeVOG4569,

Phigaro v2.4.0 (Database: Jan. 2024 release)


Insertion sequence (IS) elements