Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 11 | 10 | 4 | 15.39 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NONIFMPC_1 | 2533863 | 2534717 | aadK | ARO:3002627 | aadK | 98.59 | 100.00 | AL009126.1 |
| NONIFMPC_1 | 2523659 | 2524861 | blt | ARO:3003006 | blt | 98.00 | 100.00 | L32599.1 |
| NONIFMPC_1 | 2343352 | 2344521 | bmr | ARO:3003007 | bmr | 98.97 | 100.00 | M33768.1 |
| NONIFMPC_1 | 1353746 | 1354063 | ykkD | ARO:3003064 | ykkD | 98.10 | 100.00 | AL009126.1 |
| NONIFMPC_1 | 1353408 | 1353746 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| NONIFMPC_1 | 896018 | 898588 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| NONIFMPC_1 | 593704 | 595329 | vmlR | ARO:3004476 | vmlR | 98.15 | 98.90 | NC_000964.3 |
| NONIFMPC_1 | 329120 | 329713 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| NONIFMPC_1 | 275133 | 276566 | lmrB | ARO:3002813 | lmrB | 99.16 | 100.00 | JYFL01000006.1 |
| NONIFMPC_1 | 265133 | 266053 | mphK | ARO:3004541 | mphK | 91.09 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NONIFMPC_1 | 2533863 | 2534717 | aadK | Streptomycin | 98.95 | 100.00 | M26879 |
| NONIFMPC_1 | 265133 | 266053 | mph(K) | Spiramycin, Telithromycin | 92.85 | 99.78 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NONIFMPC_1 | 2533866 | 2534717 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 98.59 | 100.00 | WP_003229862.1 |
| NONIFMPC_1 | 593707 | 595329 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 98.15 | 98.90 | WP_003234144.1 |
| NONIFMPC_1 | 265133 | 266041 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 91.09 | 99.02 | WP_003246254.1 |
| NONIFMPC_1 | 2036568 | 2039165 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 80.94 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| NONIFMPC_1 | 2141128 | 2141769 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 99.53 | 100.00 | NP_390062 |
| NONIFMPC_1 | 3491366 | 3492547 | capB | 0.0 | Capsule | Immune modulation | 99.49 | 100.00 | NP_391471 |
| NONIFMPC_1 | 3082310 | 3083095 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.49 | 100.00 | NP_391080 |
| NONIFMPC_1 | 3490902 | 3491351 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| NONIFMPC_1 | 1987950 | 1989713 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| NONIFMPC_1 | 3489741 | 3490883 | capA | 0.0 | Capsule | Immune modulation | 98.95 | 100.00 | NP_391469 |
| NONIFMPC_1 | 3078473 | 3079411 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.51 | 100.00 | NP_391077 |
| NONIFMPC_1 | 3071317 | 3078453 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.01 | 100.00 | NP_391076 |
| NONIFMPC_1 | 3079439 | 3081058 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 97.78 | 100.00 | NP_391078 |
| NONIFMPC_1 | 3081087 | 3082283 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 96.07 | 100.00 | NP_391079 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| NONIFMPC_1 | 132744 | 133880 | tufA | 0.0 | elongation factor Tu | 85.22 | 95.69 | AHM69299 |
| NONIFMPC_1 | 19007 | 19876 | pdxS | 2.98e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| NONIFMPC_1 | 1664600 | 1665376 | CodY | 3.25e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| NONIFMPC_1 | 3340521 | 3341090 | ClpP | 2.41e-98 | part of proteolytic complex | 81.05 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NONIFMPC_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NONIFMPC_1 | 1298315 | 1323573 | False | Myoviridae | VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG4705 |
Phigaro v2.4.0 (Database: Jan. 2024 release)