Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 10 | 1 | 0 | 10.05 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDFDLJBI_2 | 1550932 | 1551429 | nimJ | ARO:3007112 | nimJ | 100.00 | 100.00 | KJ816753.1 |
| IDFDLJBI_2 | 1513326 | 1514150 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| IDFDLJBI_2 | 1512269 | 1513123 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.77 | M17124.1 |
| IDFDLJBI_3 | 495106 | 497031 | tet(Q) | ARO:3000191 | tet(Q) | 97.19 | 97.56 | Z21523.1 |
| IDFDLJBI_3 | 144326 | 145228 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| IDFDLJBI_3 | 58106 | 60080 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| IDFDLJBI_3 | 46530 | 47324 | APH(3')-IIIa | ARO:3002647 | APH(3')-IIIa | 100.00 | 100.00 | CP004067.1 |
| IDFDLJBI_1 | 238 | 735 | nimJ | ARO:3007112 | nimJ | 100.00 | 100.00 | KJ816753.1 |
| IDFDLJBI_5 | 215 | 712 | nimJ | ARO:3007112 | nimJ | 100.00 | 100.00 | KJ816753.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IDFDLJBI_3 | 46530 | 47324 | aph(3')-III | Kanamycin, Amikacin, Neomycin, Butirosin, Isepamicin, Lividomycin, Paromomycin, Ribostamycin | 100.00 | 100.00 | M26832 |
| IDFDLJBI_2 | 1513326 | 1514150 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| IDFDLJBI_1 | 238 | 735 | nimJ | Metronidazole | 100.00 | 100.00 | NZ_JH815495 |
| IDFDLJBI_3 | 58154 | 60079 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| IDFDLJBI_3 | 144326 | 145228 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | FR688022 |
| IDFDLJBI_2 | 1512323 | 1513123 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| IDFDLJBI_3 | 43741 | 44958 | mef(A) | Erythromycin, Azithromycin | 95.07 | 100.00 | AF227520 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IDFDLJBI_3 | 46530 | 47321 | aph(3')-IIIa | aminoglycoside O-phosphotransferase APH(3')-IIIa | EXACTX | 100.00 | 100.00 | WP_001096887.1 |
| IDFDLJBI_2 | 1513329 | 1514150 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| IDFDLJBI_3 | 144329 | 145228 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005816369.1 |
| IDFDLJBI_1 | 238 | 732 | nimJ | 5-nitroimidazole reductase NimJ | EXACTX | 100.00 | 100.00 | WP_005812825.1 |
| IDFDLJBI_2 | 1550932 | 1551426 | nimJ | 5-nitroimidazole reductase NimJ | EXACTX | 100.00 | 100.00 | WP_005812825.1 |
| IDFDLJBI_5 | 215 | 709 | nimJ | 5-nitroimidazole reductase NimJ | EXACTX | 100.00 | 100.00 | WP_005812825.1 |
| IDFDLJBI_3 | 58154 | 60076 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| IDFDLJBI_2 | 1512323 | 1513120 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| IDFDLJBI_3 | 43741 | 44961 | mef(A) | macrolide efflux MFS transporter Mef(A) | INTERNAL_STOP | 98.53 | 99.75 | WP_012102963.1 |
| IDFDLJBI_3 | 495106 | 497028 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.50 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| IDFDLJBI_2 | 58758 | 59951 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| IDFDLJBI_2 | 58758 | 59951 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| IDFDLJBI_2 | 58758 | 59951 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IDFDLJBI_1 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_2 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_3 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_4 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_5 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_6 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_7 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_8 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_9 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_10 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_11 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_12 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_13 | 0.0 | 1.0 | 0.0 |
| IDFDLJBI_14 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)