Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMFEOHPI_6 | 218603 | 220528 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KMFEOHPI_6 | 218603 | 220528 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KMFEOHPI_6 | 218603 | 220525 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| KMFEOHPI_3 | 268059 | 269639 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| KMFEOHPI_13 | 67 | 746 | repUS2 | 682 / 681 | 98.53 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KMFEOHPI_1 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_2 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_3 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_4 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_5 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_6 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_7 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_8 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_9 | 0.0 | 1.0 | 0.0 |
| KMFEOHPI_10 | 1.0 | 0.0 | 1.0 |
| KMFEOHPI_11 | 1.0 | 0.0 | 1.0 |
| KMFEOHPI_12 | 1.0 | 0.0 | 1.0 |
| KMFEOHPI_13 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KMFEOHPI_2 | 322197 | 329905 | False | Siphoviridae | VOG7238, |
| KMFEOHPI_3 | 174185 | 179498 | True | Unknown | VOG4573, |
| KMFEOHPI_3 | 231743 | 233889 | False | Unknown | VOG6282, |
| KMFEOHPI_5 | 185820 | 197945 | False | Myoviridae | / |
Phigaro v2.4.0 (Database: Jan. 2024 release)