Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JGKPFENM_37 | 8733 | 8029 | WalR | 1.82e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JGKPFENM_17 | 9328 | 9525 | CspR | 5.74e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
| JGKPFENM_12 | 115836 | 116510 | CcpA | 2.45e-142 | global transcriptional regulator of carbon catabolite repression | 80.44 | 66.37 | AFK59626 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JGKPFENM_1 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_2 | 1.0 | 0.0 | 1.0 |
| JGKPFENM_3 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_4 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_5 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_6 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_7 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_8 | 1.0 | 0.0 | 1.0 |
| JGKPFENM_9 | 1.0 | 0.0 | 1.0 |
| JGKPFENM_10 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_11 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_12 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_13 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_14 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_15 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_16 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_17 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_18 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_19 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_20 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_21 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_22 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_23 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_24 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_25 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_26 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_27 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_28 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_29 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_30 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_31 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_32 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_33 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_34 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_35 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_36 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_37 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_38 | 0.0 | 1.0 | 0.0 |
| JGKPFENM_39 | 1.0 | 0.0 | 1.0 |
| JGKPFENM_40 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JGKPFENM_17 | 30089 | 36952 | False | Siphoviridae | VOG1309, VOG0186, VOG4566, VOG6238, VOG1638, VOG8987, VOG11003, VOG9860, VOG0536, VOG9741, VOG0152 |
| JGKPFENM_28 | 2174 | 16497 | False | Siphoviridae | VOG0044, VOG1183, VOG3643, VOG3307, VOG0152, VOG4643, VOG0275, VOG0195, VOG9759, VOG0327, VOG4606, VOG6545, VOG4548, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG0707 |
| JGKPFENM_38 | 48256 | 58719 | False | Siphoviridae | VOG1581, VOG4632, VOG4609, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)