Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JAFHMGAD_55 | 24662 | 23958 | WalR | 5.01e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| JAFHMGAD_20 | 15724 | 15921 | CspR | 9.62e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| JAFHMGAD_64 | 4003 | 5064 | repUS74 | 1062 / 1062 | 99.72 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JAFHMGAD_1 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_2 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_3 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_4 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_5 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_6 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_7 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_8 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_9 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_10 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_11 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_12 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_13 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_14 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_15 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_16 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_17 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_18 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_19 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_20 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_21 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_22 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_23 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_24 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_25 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_26 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_27 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_28 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_29 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_30 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_31 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_32 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_33 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_34 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_35 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_36 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_37 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_38 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_39 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_40 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_41 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_42 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_43 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_44 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_45 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_46 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_47 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_48 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_49 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_50 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_51 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_52 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_53 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_54 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_55 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_56 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_57 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_58 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_59 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_60 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_61 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_62 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_63 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_64 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_65 | 0.0 | 1.0 | 0.0 |
| JAFHMGAD_67 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_68 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_69 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_70 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_71 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_73 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_74 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_75 | 1.0 | 0.0 | 1.0 |
| JAFHMGAD_76 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JAFHMGAD_10 | 61601 | 63493 | False | Siphoviridae | VOG4799 |
| JAFHMGAD_18 | 48204 | 59098 | False | Siphoviridae | VOG4632, VOG4606, VOG0205, VOG4841, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204 |
| JAFHMGAD_41 | 49725 | 83918 | False | Siphoviridae | VOG1246, VOG6083, VOG4918, VOG0703, VOG7017, VOG0861, VOG7896, VOG6455, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG4564, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570 |
| JAFHMGAD_41 | 87285 | 91933 | False | Unknown | VOG0536, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309 |
Phigaro v2.4.0 (Database: Jan. 2024 release)