Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| OBBHMPBI_41 | 43988 | 43284 | WalR | 6.01e-115 | transcriptional regulatory protein | 84.25 | 100.00 | EPH95667 |
| OBBHMPBI_13 | 7288 | 7482 | CspR | 4.11e-30 | cold shock protein | 84.61 | 98.48 | AAO82613 |
| OBBHMPBI_13 | 7288 | 7485 | CspA | 6.31e-30 | cold shock protein | 84.85 | 100.00 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| OBBHMPBI_35 | 11236 | 11883 | rep28 | 648 / 936 | 97.07 | CP005948 |
| OBBHMPBI_44 | 2 | 946 | repUS64 | 946 / 954 | 92.28 | JN601038 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OBBHMPBI_1 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_2 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_3 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_4 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_5 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_6 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_7 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_8 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_9 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_10 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_11 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_12 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_13 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_14 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_16 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_17 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_18 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_19 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_20 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_21 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_22 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_23 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_24 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_25 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_26 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_27 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_28 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_31 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_32 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_33 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_34 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_35 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_37 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_38 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_39 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_40 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_41 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_42 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_43 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_44 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_45 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_46 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_47 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_55 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_56 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_57 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_59 | 0.0 | 1.0 | 0.0 |
| OBBHMPBI_63 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_66 | 1.0 | 0.0 | 1.0 |
| OBBHMPBI_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OBBHMPBI_4 | 34031 | 66411 | False | Siphoviridae | VOG8438, VOG4904, VOG3462, VOG0801, VOG6163, VOG0725, VOG0799, VOG0724, VOG9583, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG10227, VOG0796, VOG9667, VOG0198, VOG2602, VOG3643, VOG0044, VOG0586, VOG4693, VOG4552, VOG0189, VOG5046, VOG0226, VOG0283, VOG0321, VOG0650, VOG3549, VOG11077, VOG9667 |
Phigaro v2.4.0 (Database: Jan. 2024 release)