Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PAOOCFBE_1 | 32162 | 32863 | WalR | 3.28e-107 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PAOOCFBE_8 | 3004 | 3939 | rep28 | 936 / 936 | 100.00 | CP005948 |
| PAOOCFBE_2 | 19589 | 20623 | rep38 | 1045 / 1104 | 81.53 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PAOOCFBE_1 | 0.0 | 1.0 | 0.0 |
| PAOOCFBE_2 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_3 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_4 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_5 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_6 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_7 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_8 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_9 | 1.0 | 0.0 | 1.0 |
| PAOOCFBE_10 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PAOOCFBE_1 | 1720334 | 1753310 | False | Myoviridae | VOG0703, VOG0641, VOG3298, VOG3298, VOG10914, VOG4845, VOG4691, VOG4550, VOG0573, VOG1348, VOG1433, VOG1956, VOG6163, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG4778, VOG1942, VOG2779, VOG1915, VOG4865, VOG4564, VOG1912, VOG10227, VOG0796, VOG0143, VOG0198, VOG0044, VOG6005, VOG4693, VOG7236 |
| PAOOCFBE_1 | 2134638 | 2172721 | False | Myoviridae | VOG0198, VOG8647, VOG0901, VOG3480, VOG1246, VOG6495, VOG0275, VOG0602, VOG8917, VOG7896, VOG4862, VOG4691, VOG8037, VOG3894, VOG4885, VOG4865, VOG3892, VOG3891, VOG3890, VOG5612, VOG4870, VOG1900, VOG3888, VOG4623, VOG3480, VOG4572, VOG4555, VOG9409, VOG4564, VOG0720, VOG10227, VOG0796, VOG8360, VOG0044, VOG0327, VOG4606, VOG0226, VOG6394, VOG4548, VOG0322, VOG0685 |
Phigaro v2.4.0 (Database: Jan. 2024 release)