Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| IFLBGDEP_50 | 56359 | 55655 | WalR | 8.19e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| IFLBGDEP_78 | 75388 | 75191 | CspR | 1.20e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IFLBGDEP_2 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_3 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_4 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_5 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_6 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_7 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_8 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_9 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_10 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_11 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_13 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_14 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_15 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_16 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_17 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_18 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_19 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_20 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_21 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_22 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_23 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_24 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_25 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_26 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_28 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_29 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_30 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_31 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_32 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_33 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_34 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_35 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_36 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_37 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_38 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_39 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_40 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_41 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_42 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_43 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_44 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_46 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_47 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_48 | 1.0 | 0.0 | 1.0 |
| IFLBGDEP_49 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_50 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_51 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_52 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_54 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_55 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_56 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_58 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_59 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_60 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_61 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_62 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_63 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_64 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_65 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_66 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_67 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_68 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_69 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_70 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_71 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_72 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_73 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_74 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_75 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_78 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_79 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_80 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_81 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_82 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_83 | 0.0 | 1.0 | 0.0 |
| IFLBGDEP_85 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IFLBGDEP_78 | 20545 | 55628 | False | Siphoviridae | VOG4918, VOG0054, VOG7888, VOG4599, VOG4605, VOG4545, VOG0800, VOG0725, VOG0799, VOG0724, VOG5660, VOG0723, VOG4713, VOG1322, VOG1887, VOG3434, VOG4555, VOG1183, VOG1300, VOG5616, VOG4564, VOG0720, VOG4544, VOG3699, VOG4570, VOG1315, VOG0198, VOG3307, VOG0044, VOG3643, VOG0152, VOG9741, VOG0536, VOG9860, VOG0226, VOG4566, VOG0186, VOG1309, VOG8241 |
Phigaro v2.4.0 (Database: Jan. 2024 release)