Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| HHKJKNIM_258 | 58585 | 59289 | WalR | 4.72e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| HHKJKNIM_255 | 289 | 92 | CspR | 5.48e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HHKJKNIM_220 | 600 | 1661 | repUS74 | 1064 / 1062 | 92.20 | CP000424 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HHKJKNIM_1 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_2 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_3 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_4 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_6 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_7 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_8 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_9 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_11 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_12 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_14 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_16 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_17 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_18 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_19 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_20 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_21 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_25 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_26 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_27 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_28 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_29 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_30 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_31 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_33 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_34 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_35 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_36 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_37 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_39 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_41 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_43 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_46 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_47 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_48 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_49 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_51 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_52 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_53 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_54 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_56 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_57 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_59 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_60 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_61 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_62 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_63 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_64 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_65 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_66 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_68 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_69 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_70 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_71 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_72 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_73 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_74 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_75 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_76 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_77 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_78 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_79 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_82 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_83 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_84 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_85 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_86 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_88 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_89 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_90 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_91 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_92 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_93 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_94 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_96 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_97 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_98 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_99 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_100 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_101 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_102 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_103 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_104 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_105 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_107 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_108 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_109 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_110 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_111 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_112 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_114 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_115 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_118 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_119 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_122 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_124 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_125 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_126 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_127 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_128 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_129 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_130 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_131 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_132 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_134 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_135 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_136 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_137 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_138 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_140 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_141 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_142 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_143 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_145 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_148 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_150 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_154 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_155 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_156 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_158 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_159 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_162 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_163 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_164 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_170 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_171 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_172 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_174 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_178 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_179 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_180 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_183 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_184 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_185 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_186 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_187 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_189 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_193 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_194 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_196 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_197 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_198 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_199 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_200 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_201 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_202 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_203 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_204 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_205 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_206 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_207 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_208 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_209 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_211 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_212 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_215 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_216 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_219 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_220 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_221 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_223 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_224 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_229 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_230 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_231 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_234 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_235 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_236 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_237 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_238 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_241 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_242 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_245 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_246 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_248 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_250 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_251 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_252 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_253 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_255 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_257 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_258 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_259 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_260 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_261 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_262 | 1.0 | 0.0 | 1.0 |
| HHKJKNIM_264 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_265 | 0.0 | 1.0 | 0.0 |
| HHKJKNIM_266 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HHKJKNIM_70 | 5770 | 11678 | False | Unknown | VOG0152, VOG4567, VOG0536, VOG9860, VOG11003, VOG4566, VOG0186 |
| HHKJKNIM_73 | 2045 | 11790 | False | Siphoviridae | VOG4799, VOG10867, VOG0181, VOG3459, VOG3711, VOG4552, VOG4552, VOG10917, VOG11003, VOG6495, VOG6914, VOG6422, VOG0002, VOG9860 |
| HHKJKNIM_266 | 7700 | 18114 | False | Siphoviridae | VOG4632, VOG4606, VOG4581, VOG4544, VOG5051, VOG4556, VOG4568, VOG0204, VOG4589 |
Phigaro v2.4.0 (Database: Jan. 2024 release)