Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| GFGLFDEM_2 | 15146 | 14442 | WalR | 7.20e-113 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| GFGLFDEM_17 | 30926 | 30729 | CspR | 5.42e-34 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GFGLFDEM_1 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_2 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_3 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_4 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_5 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_6 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_7 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_8 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_9 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_10 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_11 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_12 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_13 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_14 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_15 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_16 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_17 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_18 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_19 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_20 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_21 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_22 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_23 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_24 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_25 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_26 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_27 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_28 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_29 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_30 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_31 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_32 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_33 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_34 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_35 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_36 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_37 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_38 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_39 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_40 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_41 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_42 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_43 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_44 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_45 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_46 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_47 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_48 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_49 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_50 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_51 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_52 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_53 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_54 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_55 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_56 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_57 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_58 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_59 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_60 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_61 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_62 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_63 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_64 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_65 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_66 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_67 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_68 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_69 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_70 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_71 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_72 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_73 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_74 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_75 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_76 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_77 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_78 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_79 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_80 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_81 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_82 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_83 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_84 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_85 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_86 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_87 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_88 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_89 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_90 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_91 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_92 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_93 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_94 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_95 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_96 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_97 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_98 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_99 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_100 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_101 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_102 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_103 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_104 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_105 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_106 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_107 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_108 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_109 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_110 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_111 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_112 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_113 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_114 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_115 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_116 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_117 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_118 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_119 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_120 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_121 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_122 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_123 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_124 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_125 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_126 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_127 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_128 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_129 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_130 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_131 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_132 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_133 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_134 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_135 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_136 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_137 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_138 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_139 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_140 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_141 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_142 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_143 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_144 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_145 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_146 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_147 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_148 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_149 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_150 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_151 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_152 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_153 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_154 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_155 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_156 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_157 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_158 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_159 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_160 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_161 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_162 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_163 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_164 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_165 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_166 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_167 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_168 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_170 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_171 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_172 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_173 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_174 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_175 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_176 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_177 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_178 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_179 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_180 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_181 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_182 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_183 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_184 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_185 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_186 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_187 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_188 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_189 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_190 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_191 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_192 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_193 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_194 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_195 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_197 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_198 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_199 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_200 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_201 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_202 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_203 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_204 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_205 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_206 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_207 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_208 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_209 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_211 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_212 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_213 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_214 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_215 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_216 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_217 | 1.0 | 0.0 | 1.0 |
| GFGLFDEM_218 | 0.0 | 1.0 | 0.0 |
| GFGLFDEM_219 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GFGLFDEM_12 | 4516 | 42208 | False | Siphoviridae | VOG4649, VOG0054, VOG1637, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG2225, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG10868, VOG4553, VOG4568, VOG4556, VOG3644, VOG4544, VOG4581, VOG4841, VOG0531, VOG4549, VOG10904, VOG4570, VOG4694, VOG0198, VOG1563, VOG0044, VOG1183, VOG3643, VOG3307, VOG0152, VOG4567, VOG0536, VOG7018, VOG0189, VOG4566, VOG0226, VOG0514, VOG0283, VOG0685, VOG3642, VOG4967, VOG0181, VOG4552 |
| GFGLFDEM_30 | 1848 | 29489 | False | Siphoviridae | VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG7540, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG0198, VOG1563, VOG2874, VOG0044, VOG3643, VOG0152, VOG4237, VOG0195, VOG9759, VOG4606, VOG6545, VOG3777, VOG4548, VOG0322, VOG0321, VOG3642, VOG4967 |
Phigaro v2.4.0 (Database: Jan. 2024 release)