Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCACECBK_5 | 6690 | 7340 | Streptococcus suis chloramphenicol acetyltransferase | ARO:3004455 | Ssui_ACT_CHL | 96.30 | 100.00 | AB080798.1 |
| PCACECBK_5 | 1 | 1920 | tet(W) | ARO:3000194 | tet(W) | 96.56 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PCACECBK_5 | 6690 | 7340 | cat(pC194) | Chloramphenicol | 98.92 | 100.00 | NC_002013 |
| PCACECBK_5 | 1 | 1920 | tet(W) | Doxycycline, Tetracycline, Minocycline | 98.91 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PCACECBK_5 | 1 | 1917 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | BLASTX | 99.37 | 100.00 | WP_000691721.1 |
| PCACECBK_5 | 6690 | 7406 | cat-TC | type A-9 chloramphenicol O-acetyltransferase Cat-TC | INTERNAL_STOP | 90.79 | 100.00 | WP_032488880.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| PCACECBK_4 | 8004 | 8780 | rep30 | 777 / 777 | 100.00 | CP006013 |
| PCACECBK_2 | 6447 | 7485 | repUS67 | 1039 / 1039 | 100.00 | CP006012 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PCACECBK_1 | 0.0 | 1.0 | 0.0 |
| PCACECBK_2 | 1.0 | 0.0 | 1.0 |
| PCACECBK_3 | 1.0 | 0.0 | 1.0 |
| PCACECBK_4 | 1.0 | 0.0 | 1.0 |
| PCACECBK_5 | 1.0 | 0.0 | 1.0 |
| PCACECBK_6 | 1.0 | 0.0 | 1.0 |
| PCACECBK_7 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PCACECBK_1 | 1538949 | 1554550 | False | Siphoviridae | VOG4999, VOG0205, VOG4841, VOG4581, VOG4544, VOG4556, VOG4568, VOG0204, VOG0198, VOG5088, VOG4615, VOG0243, VOG5826 |
| PCACECBK_3 | 3288 | 39183 | False | Siphoviridae | VOG0327, VOG4609, VOG4632, VOG6545, VOG0322, VOG4548, VOG0650, VOG0321, VOG3478, VOG8520, VOG8520, VOG4602, VOG0275, VOG0703, VOG1637, VOG4626, VOG9997, VOG0565, VOG10972, VOG3462, VOG0801, VOG0083, VOG0209, VOG4586, VOG0207, VOG0205, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886 |
Phigaro v2.4.0 (Database: Jan. 2024 release)