Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 1 | 7 | 7.14 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FBEMLICP_12 | 433345 | 434721 | tet(L) | Doxycycline, Tetracycline, Doxycycline, Tetracycline, Minocycline, Tigecycline | 87.00 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FBEMLICP_12 | 433351 | 434721 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.21 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FBEMLICP_23 | 514422 | 515603 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FBEMLICP_8 | 27903 | 26767 | tufA | 0.0 | elongation factor Tu | 86.81 | 95.69 | AHM69299 |
| FBEMLICP_15 | 4426 | 5295 | pdxS | 1.36e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| FBEMLICP_1 | 480713 | 479937 | CodY | 1.04e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| FBEMLICP_34 | 254924 | 255316 | spxA1 | 6.38e-70 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| FBEMLICP_45 | 85951 | 85754 | CspA | 1.35e-31 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| FBEMLICP_34 | 39312 | 39118 | CspB | 6.08e-27 | cold shock protein | 84.61 | 98.48 | CAD00094 |
| FBEMLICP_45 | 85951 | 85757 | CspR | 1.77e-26 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| FBEMLICP_4 | 13062 | 12190 | lipA (SAUSA300_0829) | 3.28e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FBEMLICP_20 | 4808 | 4971 | Col(SD853) | 164 / 194 | 87.80 | NC015392 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FBEMLICP_1 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_2 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_3 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_4 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_5 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_6 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_7 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_8 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_9 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_10 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_11 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_12 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_13 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_14 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_15 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_16 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_17 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_18 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_19 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_20 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_23 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_24 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_25 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_26 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_28 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_30 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_31 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_33 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_34 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_35 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_36 | 1.0 | 0.0 | 1.0 |
| FBEMLICP_45 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_56 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_57 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_58 | 0.0 | 1.0 | 0.0 |
| FBEMLICP_59 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FBEMLICP_1 | 258973 | 277984 | False | Siphoviridae | VOG6940, VOG5534, VOG7718, VOG3390, VOG5008, VOG8610, VOG7930, VOG0275, VOG9312, VOG4910, VOG3389 |
| FBEMLICP_1 | 864262 | 871942 | False | Myoviridae | VOG0753, VOG4705, VOG3390, VOG7718, VOG4862, VOG4691, VOG4550, VOG3894, VOG4885 |
| FBEMLICP_5 | 4145 | 14510 | False | Siphoviridae | VOG0749, VOG4685, VOG4773, VOG10227, VOG0796, VOG5447, VOG4861, VOG0189 |
| FBEMLICP_13 | 3490 | 20555 | False | Siphoviridae | VOG0713, VOG6018, VOG4581, VOG1886, VOG3644, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG6163, VOG0801 |
| FBEMLICP_14 | 3048 | 15035 | False | Siphoviridae | VOG0541, VOG4586, VOG0704, VOG0539, VOG4589, VOG0204, VOG4553, VOG4573, VOG4556, VOG1886 |
Phigaro v2.4.0 (Database: Jan. 2024 release)