Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPBKAIIF_48 | 49767 | 53330 | Bifidobacterium adolescentis rpoB mutants conferring resistance to rifampicin | ARO:3004480 | Bado_rpoB_RIF | 92.48 | 100.08 | NC_008618.1 |
| KPBKAIIF_20 | 22471 | 23325 | ErmX | ARO:3000596 | ErmX | 90.49 | 100.00 | M36726.1 |
| KPBKAIIF_18 | 57 | 1976 | tet(W) | ARO:3000194 | tet(W) | 97.18 | 100.00 | AJ222769.3 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| KPBKAIIF_20 | 22471 | 23233 | erm(X) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.87 | 100.00 | X51472 |
| KPBKAIIF_18 | 57 | 1976 | tet(W) | Doxycycline, Tetracycline, Minocycline | 99.11 | 100.00 | FN396364 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| KPBKAIIF_20 | 22471 | 23322 | erm(X) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(X) | EXACTX | 100.00 | 100.00 | WP_011117480.1 |
| KPBKAIIF_18 | 60 | 1976 | tet(W) | tetracycline resistance ribosomal protection protein Tet(W) | EXACTX | 100.00 | 100.00 | WP_000691721.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| KPBKAIIF_1 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_2 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_3 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_4 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_5 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_6 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_7 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_8 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_9 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_10 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_11 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_12 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_13 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_14 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_15 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_16 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_17 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_18 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_19 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_20 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_21 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_22 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_25 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_26 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_27 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_28 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_29 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_30 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_31 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_32 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_33 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_34 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_35 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_36 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_38 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_39 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_40 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_41 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_42 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_43 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_44 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_46 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_47 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_48 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_49 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_50 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_51 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_52 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_53 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_54 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_55 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_56 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_57 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_58 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_59 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_60 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_61 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_62 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_63 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_64 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_65 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_66 | 1.0 | 0.0 | 1.0 |
| KPBKAIIF_67 | 0.0 | 1.0 | 0.0 |
| KPBKAIIF_68 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| KPBKAIIF_39 | 41960 | 51597 | False | Siphoviridae | VOG4841, VOG4544, VOG4556, VOG4568, VOG5587, VOG5589, VOG5588 |
| KPBKAIIF_46 | 6608 | 9035 | False | Siphoviridae | VOG0275, VOG2021, VOG0136 |
Phigaro v2.4.0 (Database: Jan. 2024 release)