Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CHLGBMOC_2 | 6670 | 7700 | rep38 | 1037 / 1104 | 83.99 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CHLGBMOC_1 | 0.0 | 1.0 | 0.0 |
| CHLGBMOC_2 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CHLGBMOC_1 | 3071 | 19410 | True | Myoviridae | VOG0083, VOG0382, VOG0384, VOG1026, VOG4357, VOG0205, VOG0226, VOG6085, VOG0025, VOG8295 |
| CHLGBMOC_1 | 705186 | 719001 | False | Myoviridae / Siphoviridae | VOG1279, VOG1355, VOG4624, VOG1026, VOG1292, VOG9967 |
| CHLGBMOC_1 | 748244 | 752844 | False | Unknown | VOG5292, VOG0275, VOG0862, VOG9667 |
| CHLGBMOC_1 | 866827 | 905186 | True | Siphoviridae | VOG0275, VOG5088, VOG0819, VOG0862, VOG9667, VOG3622, VOG0650, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG8685, VOG4559, VOG0198, VOG7639, VOG4618, VOG1637, VOG7312, VOG0944, VOG5532, VOG0083, VOG5088, VOG0819, VOG0862, VOG9667, VOG3622, VOG0650, VOG0321, VOG0322, VOG4548, VOG6545, VOG4606, VOG0327, VOG8685, VOG4559, VOG0198, VOG7639, VOG4618, VOG1637, VOG7312, VOG0944, VOG5532 |
| CHLGBMOC_1 | 1321324 | 1324686 | True | Unknown | VOG5532, VOG0944, VOG5532, VOG3624 |
| CHLGBMOC_1 | 1571681 | 1601176 | False | Siphoviridae | VOG4334, VOG4856, VOG5361, VOG5361, VOG10223, VOG3462, VOG0801, VOG6163, VOG0209, VOG4586, VOG0207, VOG4317, VOG0205, VOG0204, VOG4568, VOG4556, VOG10142, VOG1886, VOG4581, VOG4841, VOG0198, VOG4566, VOG0226, VOG0186, VOG1309, VOG2228, VOG4552, VOG3622, VOG6495, VOG4602 |
| CHLGBMOC_1 | 1829001 | 1847896 | False | Siphoviridae | VOG4606, VOG0327, VOG4548, VOG0198, VOG4581, VOG4571, VOG4544, VOG4556, VOG4573, VOG4553, VOG0204, VOG4589, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)