Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LEEACCJM_25 | 20598 | 19897 | WalR | 6.72e-109 | transcriptional regulatory protein | 80.34 | 99.57 | EPH95667 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LEEACCJM_1 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_2 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_3 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_4 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_5 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_6 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_7 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_8 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_9 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_10 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_11 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_12 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_13 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_14 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_15 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_16 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_17 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_19 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_20 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_21 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_22 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_23 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_24 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_25 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_26 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_27 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_28 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_29 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_30 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_31 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_32 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_33 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_34 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_35 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_36 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_37 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_38 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_39 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_40 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_41 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_42 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_43 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_44 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_45 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_46 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_47 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_48 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_49 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_51 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_52 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_53 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_54 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_55 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_56 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_57 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_59 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_60 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_61 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_62 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_63 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_64 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_65 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_66 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_67 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_68 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_69 | 1.0 | 0.0 | 1.0 |
| LEEACCJM_70 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_71 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_73 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_75 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_78 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_79 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_81 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_82 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_83 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_84 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_85 | 0.0 | 1.0 | 0.0 |
| LEEACCJM_86 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LEEACCJM_54 | 55747 | 84179 | False | Myoviridae | VOG3298, VOG3298, VOG4593, VOG10755, VOG0870, VOG4845, VOG4691, VOG4550, VOG0573, VOG1433, VOG1956, VOG6307, VOG4699, VOG1352, VOG1883, VOG1881, VOG1353, VOG2621, VOG1887, VOG3434, VOG5859, VOG4564, VOG0720, VOG7407, VOG0052 |
Phigaro v2.4.0 (Database: Jan. 2024 release)