Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| CMFKBPGH_56 | 57092 | 57796 | WalR | 2.09e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| CMFKBPGH_10 | 15353 | 15550 | CspR | 1.49e-33 | cold shock protein | 89.39 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| CMFKBPGH_21 | 773 | 1271 | repUS54 | 500 / 690 | 85.00 | EU185047 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| CMFKBPGH_1 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_2 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_3 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_4 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_5 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_6 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_7 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_8 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_10 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_11 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_12 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_13 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_14 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_15 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_16 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_17 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_20 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_21 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_23 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_24 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_29 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_30 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_31 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_34 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_36 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_37 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_38 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_39 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_40 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_41 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_42 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_45 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_50 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_51 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_54 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_56 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_58 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_61 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_64 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_65 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_66 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_68 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_69 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_70 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_74 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_75 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_76 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_77 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_79 | 1.0 | 0.0 | 1.0 |
| CMFKBPGH_80 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_82 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_83 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_85 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_86 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_87 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_88 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_89 | 0.0 | 1.0 | 0.0 |
| CMFKBPGH_91 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| CMFKBPGH_70 | 87352 | 98524 | False | Siphoviridae | VOG6495, VOG11003, VOG9155, VOG10059, VOG0181, VOG10867, VOG1302, VOG4967, VOG0321, VOG4548, VOG0322, VOG6545, VOG4632, VOG4609, VOG5998, VOG6795 |
| CMFKBPGH_86 | 2517 | 5651 | False | Unknown | VOG9741, VOG0536, VOG9860, VOG11003 |
Phigaro v2.4.0 (Database: Jan. 2024 release)