Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 0 | 0.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| HIKAANGN_4 | 2674 | 3704 | rep38 | 1037 / 1104 | 83.99 | CP002655 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HIKAANGN_1 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_2 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_4 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_5 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_6 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_7 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_8 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_9 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_10 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_11 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_12 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_13 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_14 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_15 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_16 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_17 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_18 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_19 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_20 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_21 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_22 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_23 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_24 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_25 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_26 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_27 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_29 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_31 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_32 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_33 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_34 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_35 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_36 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_37 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_38 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_39 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_40 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_42 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_43 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_44 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_45 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_46 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_47 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_49 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_50 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_52 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_53 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_54 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_55 | 1.0 | 0.0 | 1.0 |
| HIKAANGN_56 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_59 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_62 | 0.0 | 1.0 | 0.0 |
| HIKAANGN_63 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HIKAANGN_2 | 55233 | 67889 | False | Myoviridae | VOG0703, VOG8520, VOG0862, VOG2880, VOG0226, VOG0384, VOG0382, VOG0348, VOG5235 |
Phigaro v2.4.0 (Database: Jan. 2024 release)