Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| FIBKDMCK_11 | 40325 | 41032 | WalR | 2.09e-116 | transcriptional regulatory protein | 85.59 | 100.43 | EPH95667 |
| FIBKDMCK_34 | 21067 | 21264 | CspR | 3.47e-29 | cold shock protein | 81.82 | 100.00 | AAO82613 |
| FIBKDMCK_34 | 21067 | 21261 | CspA | 1.69e-28 | cold shock protein | 81.54 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FIBKDMCK_1 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_2 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_3 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_4 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_5 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_6 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_7 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_8 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_9 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_10 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_11 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_12 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_13 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_14 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_15 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_16 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_17 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_18 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_19 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_20 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_21 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_22 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_23 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_24 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_25 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_26 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_27 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_28 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_29 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_30 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_31 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_32 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_33 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_34 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_35 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_36 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_37 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_38 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_39 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_40 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_41 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_42 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_43 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_44 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_45 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_46 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_47 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_48 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_49 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_50 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_51 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_52 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_53 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_54 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_55 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_56 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_57 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_58 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_59 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_60 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_61 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_62 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_63 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_64 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_65 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_67 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_68 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_70 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_71 | 0.0 | 1.0 | 0.0 |
| FIBKDMCK_73 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_76 | 1.0 | 0.0 | 1.0 |
| FIBKDMCK_77 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FIBKDMCK_1 | 70518 | 76407 | False | Myoviridae | VOG0267, VOG3349, VOG2788, VOG3622, VOG0267, VOG0267, VOG0267, VOG3349, VOG8288, VOG5458, VOG8288, VOG0267, VOG0267, VOG0267 |
| FIBKDMCK_10 | 5766 | 22089 | False | Siphoviridae | VOG0801, VOG6163, VOG0817, VOG0725, VOG0799, VOG0704, VOG4713, VOG1329, VOG4555, VOG4564, VOG0720, VOG4544, VOG1517 |
| FIBKDMCK_10 | 28070 | 37681 | False | Siphoviridae | VOG9667, VOG0189, VOG4799, VOG5228, VOG0514, VOG0283, VOG0535, VOG7236, VOG2338, VOG9667, VOG9667, VOG0862, VOG0792 |
| FIBKDMCK_19 | 12739 | 37549 | False | Siphoviridae | VOG4548, VOG7264, VOG4693, VOG7265, VOG1298, VOG0637, VOG7235, VOG0198, VOG8681, VOG3699, VOG4544, VOG0691, VOG0692, VOG10527, VOG4555, VOG0695, VOG0696, VOG0697, VOG0698, VOG9763, VOG0701, VOG5793, VOG0801 |
| FIBKDMCK_21 | 23206 | 25901 | False | Unknown | VOG8654, VOG8353, VOG0831 |
Phigaro v2.4.0 (Database: Jan. 2024 release)