Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEDCLNLC_45 | 13766 | 14668 | cepA | ARO:3003559 | cepA | 98.33 | 100.00 | U05883.1 |
| MEDCLNLC_42 | 13683 | 15657 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MEDCLNLC_42 | 13731 | 15656 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| MEDCLNLC_45 | 13766 | 14668 | cepA | Unknown Beta-lactam | 99.22 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MEDCLNLC_42 | 13731 | 15653 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| MEDCLNLC_45 | 13769 | 14668 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 98.67 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| MEDCLNLC_60 | 942 | 2135 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| MEDCLNLC_60 | 942 | 2135 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| MEDCLNLC_60 | 942 | 2135 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MEDCLNLC_1 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_2 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_3 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_4 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_5 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_6 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_7 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_8 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_9 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_11 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_12 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_13 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_14 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_15 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_16 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_17 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_18 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_19 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_20 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_21 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_22 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_23 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_24 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_25 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_26 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_27 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_28 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_29 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_30 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_31 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_33 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_34 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_35 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_40 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_41 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_42 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_43 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_44 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_45 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_46 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_47 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_48 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_49 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_50 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_51 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_52 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_53 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_54 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_55 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_56 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_57 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_59 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_60 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_61 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_62 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_63 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_64 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_65 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_66 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_67 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_68 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_69 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_70 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_71 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_72 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_73 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_74 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_75 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_76 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_77 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_78 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_79 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_80 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_81 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_82 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_83 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_84 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_85 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_86 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_87 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_88 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_90 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_91 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_92 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_93 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_96 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_97 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_98 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_99 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_100 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_101 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_102 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_103 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_104 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_105 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_106 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_107 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_108 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_109 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_110 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_111 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_112 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_113 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_114 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_115 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_116 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_117 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_118 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_119 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_120 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_121 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_122 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_123 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_124 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_126 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_127 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_128 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_129 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_130 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_131 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_132 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_133 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_134 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_135 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_136 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_137 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_138 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_139 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_140 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_141 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_142 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_143 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_144 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_145 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_147 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_148 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_149 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_151 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_152 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_153 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_154 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_155 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_156 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_157 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_158 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_159 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_160 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_161 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_162 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_164 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_165 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_166 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_167 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_168 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_169 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_171 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_174 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_175 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_176 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_177 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_179 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_180 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_182 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_188 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_190 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_191 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_192 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_193 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_196 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_197 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_199 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_205 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_206 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_207 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_208 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_209 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_211 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_214 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_217 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_219 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_221 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_222 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_223 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_224 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_225 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_226 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_227 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_228 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_229 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_230 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_233 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_234 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_235 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_238 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_239 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_240 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_241 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_242 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_243 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_244 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_245 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_247 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_248 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_250 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_252 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_253 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_254 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_255 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_257 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_260 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_261 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_262 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_263 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_264 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_266 | 0.0 | 1.0 | 0.0 |
| MEDCLNLC_267 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_269 | 1.0 | 0.0 | 1.0 |
| MEDCLNLC_271 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)