Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCDAHONC_96 | 291331 | 292233 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| FCDAHONC_140 | 146508 | 148482 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FCDAHONC_140 | 146508 | 148433 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| FCDAHONC_96 | 291331 | 292233 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FCDAHONC_96 | 291334 | 292233 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| FCDAHONC_140 | 146511 | 148433 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FCDAHONC_1 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_3 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_4 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_5 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_6 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_7 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_9 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_10 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_12 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_15 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_16 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_17 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_18 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_20 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_21 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_22 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_23 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_24 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_25 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_29 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_30 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_32 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_33 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_35 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_37 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_39 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_40 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_41 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_42 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_43 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_45 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_49 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_50 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_51 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_52 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_53 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_54 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_55 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_56 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_57 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_58 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_59 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_60 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_65 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_66 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_68 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_69 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_70 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_71 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_72 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_73 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_74 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_75 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_78 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_79 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_80 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_81 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_82 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_83 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_84 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_85 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_86 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_87 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_88 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_89 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_90 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_91 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_92 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_93 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_94 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_95 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_96 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_97 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_98 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_99 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_100 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_101 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_103 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_104 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_105 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_106 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_107 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_108 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_109 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_110 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_111 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_112 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_113 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_114 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_115 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_116 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_117 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_118 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_119 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_120 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_121 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_124 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_125 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_126 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_127 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_128 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_129 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_130 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_131 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_132 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_133 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_134 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_139 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_140 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_141 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_142 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_143 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_144 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_145 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_146 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_148 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_149 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_150 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_151 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_152 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_153 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_154 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_155 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_156 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_157 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_158 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_159 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_160 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_161 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_162 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_163 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_164 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_165 | 1.0 | 0.0 | 1.0 |
| FCDAHONC_166 | 0.0 | 1.0 | 0.0 |
| FCDAHONC_167 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| FCDAHONC_69 | 11999 | 15589 | False | Siphoviridae | VOG4556, |
| FCDAHONC_96 | 150708 | 156667 | False | Myoviridae | VOG0982, |
Phigaro v2.4.0 (Database: Jan. 2024 release)