Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEMCJHIA_23 | 249501 | 251475 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| OEMCJHIA_11 | 166491 | 167696 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| OEMCJHIA_11 | 30559 | 31461 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OEMCJHIA_23 | 249549 | 251474 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| OEMCJHIA_11 | 30559 | 31461 | cepA-49 | Unknown Beta-lactam | 99.78 | 100.00 | U05886 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OEMCJHIA_11 | 167721 | 168230 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OEMCJHIA_23 | 249549 | 251471 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| OEMCJHIA_11 | 166491 | 167693 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| OEMCJHIA_11 | 30562 | 31461 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OEMCJHIA_1 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_2 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_3 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_4 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_5 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_6 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_7 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_8 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_9 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_10 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_11 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_12 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_13 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_14 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_15 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_16 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_18 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_19 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_20 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_21 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_22 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_23 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_24 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_27 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_28 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_30 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_32 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_33 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_34 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_35 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_36 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_39 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_40 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_42 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_43 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_44 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_47 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_49 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_50 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_51 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_52 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_53 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_55 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_56 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_57 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_59 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_60 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_61 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_62 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_63 | 0.0 | 1.0 | 0.0 |
| OEMCJHIA_66 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_72 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_73 | 1.0 | 0.0 | 1.0 |
| OEMCJHIA_74 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)