Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPCKAFL_50 | 66967 | 67869 | CepA-44 | ARO:3006225 | CepA-44 | 99.00 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| PMPCKAFL_50 | 66967 | 67869 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | U05887 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| PMPCKAFL_50 | 66970 | 67869 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PMPCKAFL_1 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_2 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_3 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_4 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_5 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_6 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_7 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_9 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_10 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_12 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_13 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_14 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_15 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_16 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_17 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_18 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_19 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_21 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_22 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_23 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_24 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_25 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_26 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_27 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_28 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_29 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_30 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_32 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_33 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_34 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_35 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_36 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_37 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_38 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_39 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_40 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_41 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_42 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_43 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_44 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_45 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_46 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_47 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_48 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_49 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_50 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_51 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_52 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_53 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_54 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_56 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_57 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_58 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_59 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_60 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_61 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_62 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_63 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_64 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_67 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_68 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_69 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_70 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_71 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_72 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_75 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_76 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_77 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_79 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_81 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_82 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_83 | 1.0 | 0.0 | 1.0 |
| PMPCKAFL_84 | 0.0 | 1.0 | 0.0 |
| PMPCKAFL_85 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PMPCKAFL_34 | 19450 | 22855 | False | Unknown | VOG4568, |
Phigaro v2.4.0 (Database: Jan. 2024 release)