Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGDHOLMB_33 | 1676 | 2578 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| IGDHOLMB_36 | 1003 | 2208 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| IGDHOLMB_33 | 1676 | 2578 | cepA-49 | Unknown Beta-lactam | 99.78 | 100.00 | U05886 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| IGDHOLMB_36 | 2233 | 2742 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| IGDHOLMB_236 | 1 | 696 | aadS | aminoglycoside 6-adenylyltransferase AadS | PARTIAL_CONTIG_ENDX | 100.00 | 80.84 | WP_003013318.1 |
| IGDHOLMB_33 | 1679 | 2578 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| IGDHOLMB_36 | 1003 | 2205 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| IGDHOLMB_218 | 60 | 490 | repUS2 | 433 / 681 | 80.83 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| IGDHOLMB_1 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_2 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_3 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_4 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_5 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_6 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_7 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_8 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_9 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_10 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_11 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_12 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_13 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_14 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_15 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_16 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_17 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_18 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_19 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_20 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_21 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_22 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_23 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_24 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_25 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_26 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_27 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_28 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_30 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_31 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_32 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_33 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_34 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_35 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_36 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_37 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_38 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_39 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_40 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_41 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_42 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_43 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_44 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_45 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_46 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_47 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_48 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_49 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_50 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_51 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_52 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_53 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_54 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_55 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_56 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_57 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_58 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_59 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_60 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_61 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_62 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_63 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_64 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_65 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_66 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_67 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_68 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_71 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_72 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_73 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_74 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_75 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_76 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_77 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_78 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_79 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_80 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_81 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_84 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_86 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_87 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_88 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_89 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_90 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_91 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_93 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_95 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_96 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_98 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_99 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_102 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_103 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_104 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_105 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_106 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_107 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_108 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_109 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_110 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_111 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_112 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_113 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_114 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_115 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_117 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_118 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_119 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_122 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_123 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_124 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_125 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_127 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_129 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_130 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_134 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_135 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_136 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_137 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_138 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_139 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_146 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_147 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_150 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_151 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_153 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_154 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_156 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_159 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_160 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_163 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_165 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_166 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_168 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_169 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_170 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_171 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_172 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_173 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_174 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_175 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_176 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_179 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_180 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_182 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_183 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_184 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_188 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_189 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_192 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_194 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_197 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_199 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_200 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_201 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_202 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_203 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_204 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_207 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_209 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_210 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_212 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_214 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_217 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_219 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_220 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_223 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_224 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_225 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_226 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_227 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_229 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_230 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_231 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_232 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_234 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_238 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_239 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_243 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_244 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_248 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_249 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_251 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_252 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_253 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_254 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_255 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_256 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_257 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_258 | 0.0 | 1.0 | 0.0 |
| IGDHOLMB_259 | 1.0 | 0.0 | 1.0 |
| IGDHOLMB_263 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| IGDHOLMB_48 | 5035 | 11253 | False | Siphoviridae | VOG4589, |
| IGDHOLMB_59 | 12647 | 21058 | False | Siphoviridae | VOG4841, |
| IGDHOLMB_110 | 51541 | 58503 | False | Unknown | VOG1047, |
Phigaro v2.4.0 (Database: Jan. 2024 release)