Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDNJGDJH_32 | 161023 | 162997 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| MDNJGDJH_18 | 17641 | 18543 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| MDNJGDJH_32 | 161023 | 162948 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| MDNJGDJH_18 | 17641 | 18543 | cepA | Unknown Beta-lactam | 99.67 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| MDNJGDJH_18 | 17644 | 18543 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| MDNJGDJH_32 | 161026 | 162948 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| MDNJGDJH_1 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_2 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_3 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_4 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_5 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_6 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_7 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_8 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_9 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_10 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_11 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_12 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_13 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_14 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_15 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_16 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_17 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_18 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_19 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_20 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_21 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_22 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_23 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_24 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_25 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_27 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_28 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_29 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_30 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_32 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_33 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_34 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_36 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_37 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_38 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_39 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_40 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_41 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_42 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_43 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_44 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_45 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_46 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_47 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_50 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_52 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_53 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_54 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_55 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_56 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_57 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_58 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_61 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_63 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_64 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_65 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_66 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_67 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_68 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_69 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_70 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_72 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_73 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_75 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_76 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_77 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_78 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_79 | 1.0 | 0.0 | 1.0 |
| MDNJGDJH_80 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_81 | 0.0 | 1.0 | 0.0 |
| MDNJGDJH_82 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| MDNJGDJH_15 | 161579 | 167538 | False | Myoviridae | VOG0982, |
| MDNJGDJH_33 | 7442 | 13859 | False | Siphoviridae | VOG4589, |
Phigaro v2.4.0 (Database: Jan. 2024 release)