Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGJPKOML_48 | 145222 | 147196 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| LGJPKOML_31 | 92806 | 94011 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| LGJPKOML_31 | 70862 | 71764 | CepA-44 | ARO:3006225 | CepA-44 | 98.67 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LGJPKOML_48 | 145270 | 147195 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| LGJPKOML_31 | 70862 | 71764 | cepA | Unknown Beta-lactam | 99.34 | 100.00 | FR688022 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LGJPKOML_48 | 145270 | 147192 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| LGJPKOML_31 | 92806 | 94008 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| LGJPKOML_31 | 94036 | 94545 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | BLASTX | 99.41 | 100.00 | WP_004308783.1 |
| LGJPKOML_31 | 70865 | 71764 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.00 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LGJPKOML_2 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_3 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_4 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_8 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_9 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_10 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_11 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_12 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_14 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_15 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_16 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_19 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_21 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_22 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_23 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_24 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_25 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_26 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_27 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_28 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_29 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_30 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_31 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_32 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_33 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_34 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_35 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_36 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_37 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_38 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_39 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_40 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_41 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_42 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_43 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_44 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_45 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_46 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_47 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_48 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_49 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_50 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_51 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_53 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_54 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_55 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_56 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_57 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_58 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_59 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_60 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_61 | 1.0 | 0.0 | 1.0 |
| LGJPKOML_62 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_63 | 0.0 | 1.0 | 0.0 |
| LGJPKOML_64 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)