Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NINOCPDF_40 | 21476 | 22378 | CepA-44 | ARO:3006225 | CepA-44 | 99.33 | 100.00 | NG_050386.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NINOCPDF_40 | 21476 | 22378 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | U05887 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NINOCPDF_40 | 21479 | 22378 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NINOCPDF_1 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_2 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_3 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_4 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_5 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_6 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_7 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_8 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_9 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_10 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_11 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_12 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_13 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_14 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_15 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_16 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_17 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_18 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_19 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_20 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_21 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_22 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_24 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_25 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_27 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_28 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_29 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_30 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_31 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_32 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_33 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_34 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_35 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_36 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_37 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_38 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_39 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_40 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_41 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_42 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_43 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_44 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_45 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_46 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_47 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_48 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_49 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_50 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_51 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_52 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_53 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_54 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_55 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_56 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_57 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_58 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_59 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_60 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_61 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_62 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_63 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_64 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_65 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_66 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_67 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_68 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_69 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_70 | 1.0 | 0.0 | 1.0 |
| NINOCPDF_71 | 0.0 | 1.0 | 0.0 |
| NINOCPDF_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NINOCPDF_60 | 25966 | 40178 | False | Siphoviridae | VOG11071, |
Phigaro v2.4.0 (Database: Jan. 2024 release)