Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLNMIMEM_18 | 188304 | 189206 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HLNMIMEM_18 | 188304 | 189206 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HLNMIMEM_18 | 188307 | 189206 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HLNMIMEM_1 | 1.0 | 0.0 | 1.0 |
| HLNMIMEM_2 | 1.0 | 0.0 | 1.0 |
| HLNMIMEM_3 | 1.0 | 0.0 | 1.0 |
| HLNMIMEM_6 | 1.0 | 0.0 | 1.0 |
| HLNMIMEM_7 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_8 | 1.0 | 0.0 | 1.0 |
| HLNMIMEM_9 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_10 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_11 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_12 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_13 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_14 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_15 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_16 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_17 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_18 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_19 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_21 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_23 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_25 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_26 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_27 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_28 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_29 | 0.0 | 1.0 | 0.0 |
| HLNMIMEM_31 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)