Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 1 | 0 | 7.07 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECHENIEB_89 | 101732 | 102634 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| ECHENIEB_23 | 4630 | 6603 | tet(Q) | ARO:3000191 | tet(Q) | 96.96 | 100.00 | Z21523.1 |
| ECHENIEB_1 | 4247 | 5107 | TEM-1 | ARO:3000873 | TEM-1 | 100.00 | 100.00 | AL513383.1 |
| ECHENIEB_31 | 3238 | 4101 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| ECHENIEB_31 | 1902 | 3062 | tet(X) | ARO:3000205 | tet(X) | 99.22 | 99.48 | M37699.1 |
| ECHENIEB_31 | 588 | 1727 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| ECHENIEB_18 | 478 | 1278 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ECHENIEB_1 | 4247 | 5107 | blaTEM-1A | Amoxicillin, Ampicillin, Cephalothin, Piperacillin, Ticarcillin | 100.00 | 100.00 | HM749966 |
| ECHENIEB_89 | 101732 | 102634 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| ECHENIEB_18 | 478 | 1278 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| ECHENIEB_31 | 1896 | 3062 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
| ECHENIEB_23 | 4630 | 6555 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.49 | 100.00 | X58717 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ECHENIEB_31 | 3238 | 4098 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| ECHENIEB_1 | 4250 | 5107 | blaTEM-1 | broad-spectrum class A beta-lactamase TEM-1 | ALLELEX | 100.00 | 100.00 | WP_000027057.1 |
| ECHENIEB_89 | 101732 | 102631 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| ECHENIEB_31 | 588 | 1724 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| ECHENIEB_31 | 1896 | 3059 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| ECHENIEB_18 | 478 | 1275 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| ECHENIEB_23 | 4633 | 6555 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.13 | 100.00 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| ECHENIEB_1 | 5640 | 6725 | senX3 | 0.0 | SenX3 | Regulation | 99.91 | 88.08 | NP_215004 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| ECHENIEB_1 | 3702 | 3832 | ColRNAI | 131 / 130 | 87.02 | DQ298019 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ECHENIEB_1 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_2 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_3 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_4 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_5 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_7 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_9 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_10 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_12 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_13 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_14 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_16 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_17 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_18 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_20 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_21 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_22 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_23 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_24 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_25 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_26 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_27 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_28 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_29 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_30 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_31 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_32 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_33 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_34 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_35 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_36 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_37 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_38 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_39 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_40 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_41 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_42 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_43 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_44 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_45 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_46 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_47 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_48 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_49 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_50 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_51 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_52 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_53 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_54 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_55 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_56 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_57 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_58 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_59 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_60 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_61 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_62 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_63 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_64 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_65 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_66 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_67 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_68 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_69 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_70 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_71 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_72 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_73 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_74 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_75 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_76 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_77 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_78 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_79 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_80 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_81 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_82 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_83 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_84 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_85 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_86 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_87 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_88 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_89 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_90 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_91 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_92 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_93 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_94 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_95 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_96 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_97 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_98 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_99 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_100 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_101 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_102 | 1.0 | 0.0 | 1.0 |
| ECHENIEB_103 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_104 | 0.0 | 1.0 | 0.0 |
| ECHENIEB_105 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ECHENIEB_58 | 187136 | 197345 | False | Unknown | VOG0298, |
| ECHENIEB_64 | 83854 | 91813 | False | Siphoviridae | VOG4556, |
| ECHENIEB_67 | 93412 | 102608 | False | Unknown | VOG3992, |
| ECHENIEB_73 | 42387 | 54378 | False | Unknown | VOG0572, |
| ECHENIEB_89 | 144324 | 153840 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)