Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGHCGNMA_13 | 27568 | 28470 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EGHCGNMA_13 | 27568 | 28470 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EGHCGNMA_13 | 27571 | 28470 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EGHCGNMA_1 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_2 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_3 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_4 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_5 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_6 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_7 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_8 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_9 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_10 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_11 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_13 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_14 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_15 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_16 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_17 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_18 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_20 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_21 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_22 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_23 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_24 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_25 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_26 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_27 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_28 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_29 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_30 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_31 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_32 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_33 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_34 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_35 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_36 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_37 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_38 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_39 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_40 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_41 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_42 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_43 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_44 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_45 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_46 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_47 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_48 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_50 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_51 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_52 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_53 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_54 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_55 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_56 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_59 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_60 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_61 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_62 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_63 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_65 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_66 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_67 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_68 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_69 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_70 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_71 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_72 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_73 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_74 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_75 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_76 | 0.0 | 1.0 | 0.0 |
| EGHCGNMA_77 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_78 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_79 | 1.0 | 0.0 | 1.0 |
| EGHCGNMA_80 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EGHCGNMA_15 | 190746 | 198705 | False | Siphoviridae | VOG4556, |
| EGHCGNMA_33 | 12736 | 22252 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)