Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 0 | 2.24 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFCBNLNE_35 | 60233 | 62179 | tet(Q) | ARO:3000191 | tet(Q) | 97.02 | 98.63 | Z21523.1 |
| FFCBNLNE_22 | 58612 | 59514 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| FFCBNLNE_22 | 58612 | 59514 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
| FFCBNLNE_35 | 60267 | 62179 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 98.17 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| FFCBNLNE_22 | 58615 | 59514 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| FFCBNLNE_35 | 60266 | 62179 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.81 | 99.53 | WP_004293868.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| FFCBNLNE_36 | 259229 | 260422 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 100.00 | 100.00 | BAA77276 |
| FFCBNLNE_36 | 259229 | 260422 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 94.89 | 100.00 | BAA77277 |
| FFCBNLNE_36 | 259229 | 260422 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 94.47 | 100.00 | BAA77275 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| FFCBNLNE_83 | 229 | 809 | repUS2 | 584 / 681 | 80.48 | BFU30316 |
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| FFCBNLNE_1 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_2 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_3 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_4 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_5 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_6 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_7 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_8 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_9 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_11 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_12 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_13 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_14 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_15 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_16 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_17 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_18 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_19 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_20 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_21 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_22 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_23 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_24 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_25 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_27 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_28 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_29 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_30 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_31 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_32 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_33 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_34 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_35 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_36 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_37 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_39 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_40 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_41 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_42 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_43 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_44 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_45 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_46 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_47 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_48 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_49 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_50 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_51 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_52 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_53 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_54 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_55 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_56 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_57 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_58 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_59 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_60 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_61 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_62 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_63 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_64 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_68 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_69 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_70 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_72 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_73 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_75 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_77 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_78 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_80 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_82 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_83 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_84 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_85 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_86 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_88 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_89 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_91 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_92 | 0.0 | 1.0 | 0.0 |
| FFCBNLNE_93 | 1.0 | 0.0 | 1.0 |
| FFCBNLNE_94 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)