Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 4 | 0 | 0 | 4.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBJPHBFC_43 | 112338 | 113543 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| LBJPHBFC_44 | 82560 | 84485 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| LBJPHBFC_43 | 18653 | 19555 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LBJPHBFC_44 | 82560 | 84485 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| LBJPHBFC_43 | 18653 | 19555 | cepA-29 | Unknown Beta-lactam | 99.45 | 100.00 | U05884 |
| LBJPHBFC_43 | 18653 | 19555 | cepA-44 | Unknown Beta-lactam | 99.45 | 100.00 | U05885 |
| LBJPHBFC_43 | 18653 | 19555 | cepA | Unknown Beta-lactam | 99.45 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LBJPHBFC_43 | 113568 | 114077 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| LBJPHBFC_44 | 82560 | 84482 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| LBJPHBFC_43 | 18656 | 19555 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005816369.1 |
| LBJPHBFC_43 | 112338 | 113540 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LBJPHBFC_2 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_3 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_5 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_6 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_7 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_9 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_10 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_11 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_12 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_14 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_15 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_16 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_19 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_20 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_21 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_22 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_23 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_26 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_27 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_28 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_29 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_30 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_31 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_32 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_33 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_34 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_35 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_36 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_37 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_38 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_39 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_40 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_41 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_42 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_43 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_44 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_45 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_46 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_47 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_48 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_49 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_50 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_51 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_52 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_53 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_54 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_55 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_56 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_57 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_58 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_59 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_60 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_61 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_62 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_63 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_64 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_65 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_66 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_67 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_68 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_69 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_70 | 0.0 | 1.0 | 0.0 |
| LBJPHBFC_71 | 1.0 | 0.0 | 1.0 |
| LBJPHBFC_72 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| No hit found | |||||
Phigaro v2.4.0 (Database: Jan. 2024 release)