Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 0 | 3.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPFKCPEM_84 | 173979 | 175925 | tet(Q) | ARO:3000191 | tet(Q) | 97.49 | 98.63 | Z21523.1 |
| GPFKCPEM_84 | 141270 | 142136 | ErmF | ARO:3000498 | ErmF | 98.50 | 108.27 | M17124.1 |
| GPFKCPEM_189 | 18135 | 19037 | cepA | ARO:3003559 | cepA | 99.33 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| GPFKCPEM_189 | 18135 | 19037 | cepA-29 | Unknown Beta-lactam | 99.78 | 100.00 | U05884 |
| GPFKCPEM_189 | 18135 | 19037 | cepA | Unknown Beta-lactam | 99.78 | 100.00 | L13472 |
| GPFKCPEM_84 | 141270 | 142070 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| GPFKCPEM_84 | 174013 | 175925 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.11 | 99.33 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| GPFKCPEM_189 | 18138 | 19037 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.33 | 100.00 | WP_005795628.1 |
| GPFKCPEM_84 | 141273 | 142070 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| GPFKCPEM_84 | 174012 | 175925 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 98.28 | 99.53 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| GPFKCPEM_1 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_4 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_5 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_6 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_7 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_10 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_11 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_13 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_15 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_16 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_17 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_18 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_19 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_20 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_21 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_22 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_23 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_25 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_26 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_27 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_28 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_29 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_30 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_31 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_32 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_33 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_34 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_35 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_36 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_37 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_38 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_39 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_40 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_41 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_42 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_43 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_44 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_45 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_46 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_47 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_48 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_49 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_50 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_51 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_52 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_53 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_54 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_55 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_56 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_57 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_58 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_59 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_60 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_61 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_62 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_63 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_64 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_65 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_66 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_67 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_70 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_71 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_72 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_73 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_74 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_75 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_76 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_77 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_82 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_83 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_84 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_85 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_86 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_87 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_88 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_92 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_93 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_94 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_95 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_96 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_97 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_98 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_101 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_102 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_106 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_107 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_108 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_109 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_110 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_111 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_112 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_114 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_115 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_116 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_117 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_119 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_120 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_121 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_122 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_123 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_126 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_127 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_128 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_129 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_131 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_134 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_136 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_137 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_138 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_140 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_141 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_142 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_144 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_145 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_146 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_147 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_148 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_149 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_150 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_151 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_152 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_153 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_154 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_155 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_156 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_157 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_158 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_159 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_161 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_163 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_165 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_166 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_168 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_169 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_171 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_172 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_173 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_174 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_175 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_176 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_178 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_181 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_182 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_185 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_186 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_187 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_188 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_189 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_190 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_191 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_192 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_193 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_194 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_195 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_197 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_198 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_199 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_200 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_201 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_202 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_205 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_206 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_207 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_208 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_209 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_210 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_211 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_213 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_215 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_216 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_218 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_220 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_221 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_223 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_225 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_226 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_227 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_228 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_229 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_230 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_233 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_234 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_235 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_236 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_237 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_239 | 1.0 | 0.0 | 1.0 |
| GPFKCPEM_240 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_241 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_242 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_243 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_245 | 0.0 | 1.0 | 0.0 |
| GPFKCPEM_246 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| GPFKCPEM_85 | 13544 | 21483 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)