Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 1 | 1.41 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFFJEMPC_77 | 41128 | 42030 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| LFFJEMPC_77 | 41128 | 42030 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| LFFJEMPC_77 | 41128 | 42027 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| LFFJEMPC_70 | 203670 | 202297 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 80.13 | 84.04 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| LFFJEMPC_1 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_2 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_3 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_4 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_5 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_6 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_7 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_8 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_10 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_11 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_12 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_14 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_15 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_16 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_20 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_21 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_22 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_24 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_26 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_27 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_28 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_29 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_30 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_31 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_32 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_33 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_34 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_35 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_36 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_38 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_39 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_40 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_41 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_42 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_43 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_44 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_45 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_46 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_47 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_48 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_49 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_50 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_51 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_52 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_53 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_54 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_55 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_56 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_57 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_58 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_59 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_60 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_61 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_62 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_63 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_64 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_65 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_66 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_67 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_68 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_69 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_70 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_71 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_72 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_73 | 1.0 | 0.0 | 1.0 |
| LFFJEMPC_74 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_75 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_76 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_77 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_78 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_79 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_80 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_82 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_83 | 0.0 | 1.0 | 0.0 |
| LFFJEMPC_84 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| LFFJEMPC_56 | 83967 | 93986 | False | Siphoviridae | VOG4581, |
| LFFJEMPC_77 | 83720 | 93236 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)