Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 7 | 0 | 0 | 7.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCOODKIF_51 | 23623 | 24525 | cepA | ARO:3003559 | cepA | 100.00 | 100.00 | U05883.1 |
| JCOODKIF_7 | 4630 | 6555 | tet(Q) | ARO:3000191 | tet(Q) | 97.04 | 97.56 | Z21523.1 |
| JCOODKIF_82 | 3338 | 4201 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| JCOODKIF_82 | 2026 | 3162 | tet(X) | ARO:3000205 | tet(X) | 99.21 | 97.42 | M37699.1 |
| JCOODKIF_82 | 688 | 1827 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| JCOODKIF_15 | 595 | 1395 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| JCOODKIF_25 | 528 | 2501 | tet(Q) | ARO:3000191 | tet(Q) | 97.56 | 100.00 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JCOODKIF_7 | 4630 | 6555 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| JCOODKIF_51 | 23623 | 24525 | cepA | Unknown Beta-lactam | 99.89 | 100.00 | L13472 |
| JCOODKIF_15 | 595 | 1395 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| JCOODKIF_82 | 1996 | 3162 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.74 | 100.00 | M37699 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCOODKIF_82 | 3338 | 4198 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| JCOODKIF_51 | 23626 | 24525 | cepA | CepA family extended-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005795628.1 |
| JCOODKIF_7 | 4633 | 6555 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| JCOODKIF_82 | 688 | 1824 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| JCOODKIF_82 | 1996 | 3159 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | BLASTX | 99.74 | 100.00 | WP_008651082.1 |
| JCOODKIF_15 | 595 | 1392 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| JCOODKIF_25 | 576 | 2498 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 97.66 | 100.00 | WP_002560998.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JCOODKIF_1 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_2 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_3 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_4 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_5 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_7 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_8 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_9 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_10 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_11 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_12 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_13 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_14 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_15 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_16 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_17 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_18 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_19 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_20 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_21 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_22 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_23 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_24 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_25 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_26 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_27 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_28 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_29 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_30 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_31 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_32 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_33 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_34 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_35 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_36 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_37 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_38 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_39 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_40 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_41 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_42 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_43 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_44 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_45 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_46 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_47 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_48 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_49 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_50 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_51 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_52 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_53 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_54 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_55 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_56 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_57 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_58 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_59 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_60 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_61 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_62 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_63 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_64 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_65 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_66 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_67 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_68 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_69 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_70 | 1.0 | 0.0 | 1.0 |
| JCOODKIF_71 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_72 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_73 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_74 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_75 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_76 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_77 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_78 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_79 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_80 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_81 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_82 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_83 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_85 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_86 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_87 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_88 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_89 | 0.0 | 1.0 | 0.0 |
| JCOODKIF_90 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JCOODKIF_44 | 187186 | 197395 | False | Unknown | VOG0298, |
| JCOODKIF_50 | 170463 | 179979 | False | Siphoviridae | VOG3349, |
| JCOODKIF_54 | 83854 | 91813 | False | Siphoviridae | VOG4556, |
| JCOODKIF_64 | 58366 | 69215 | False | Unknown | VOG0572, |
| JCOODKIF_65 | 93217 | 103620 | False | Unknown | VOG3992, |
| JCOODKIF_80 | 120704 | 133314 | False | Siphoviridae | VOG11071, |
| JCOODKIF_81 | 14371 | 23887 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)