Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 16 | 0 | 0 | 16.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFHCKFOO_14 | 180592 | 181494 | cepA | ARO:3003559 | cepA | 99.67 | 100.00 | U05883.1 |
| OFHCKFOO_16 | 41113 | 42318 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.25 | 100.00 | AF251288.1 |
| OFHCKFOO_119 | 29651 | 31624 | tet(Q) | ARO:3000191 | tet(Q) | 97.11 | 100.00 | Z21523.1 |
| OFHCKFOO_69 | 5173 | 5973 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| OFHCKFOO_83 | 5173 | 5973 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| OFHCKFOO_93 | 5173 | 5973 | ErmF | ARO:3000498 | ErmF | 97.74 | 100.00 | M17124.1 |
| OFHCKFOO_69 | 3728 | 4867 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| OFHCKFOO_83 | 3728 | 4918 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 110.31 | AJ311171.1 |
| OFHCKFOO_93 | 3728 | 4867 | tet(X1) | ARO:3005166 | tet(X1) | 99.72 | 105.57 | AJ311171.1 |
| OFHCKFOO_69 | 2393 | 3529 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| OFHCKFOO_83 | 2393 | 3529 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| OFHCKFOO_93 | 2393 | 3529 | tet(X) | ARO:3000205 | tet(X) | 99.47 | 97.42 | M37699.1 |
| OFHCKFOO_69 | 1354 | 2217 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| OFHCKFOO_83 | 1354 | 2217 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| OFHCKFOO_93 | 1354 | 2217 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| OFHCKFOO_119 | 29651 | 31576 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | X58717 |
| OFHCKFOO_69 | 5173 | 5973 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.88 | 100.00 | M62487 |
| OFHCKFOO_69 | 2393 | 3559 | tet(X) | Doxycycline, Tetracycline, Minocycline, Tigecycline | 99.83 | 100.00 | M37699 |
| OFHCKFOO_14 | 180592 | 181494 | cepA-49 | Unknown Beta-lactam | 99.78 | 100.00 | U05886 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| OFHCKFOO_69 | 1357 | 2217 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OFHCKFOO_83 | 1357 | 2217 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OFHCKFOO_93 | 1357 | 2217 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| OFHCKFOO_16 | 42343 | 42852 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| OFHCKFOO_119 | 29654 | 31576 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_004293868.1 |
| OFHCKFOO_69 | 2396 | 3559 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| OFHCKFOO_83 | 2396 | 3559 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| OFHCKFOO_93 | 2396 | 3559 | tet(X2) | tetracycline-inactivating monooxygenase Tet(X2) | EXACTX | 100.00 | 100.00 | WP_008651082.1 |
| OFHCKFOO_69 | 3731 | 4867 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| OFHCKFOO_83 | 3731 | 4867 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| OFHCKFOO_93 | 3731 | 4867 | tet(X1) | tetracycline-inactivating monooxygenase Tet(X1) | BLASTX | 99.74 | 100.00 | WP_204376222.1 |
| OFHCKFOO_14 | 180595 | 181494 | cepA | CepA family extended-spectrum class A beta-lactamase | BLASTX | 99.67 | 100.00 | WP_005795628.1 |
| OFHCKFOO_69 | 5173 | 5970 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| OFHCKFOO_83 | 5173 | 5970 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| OFHCKFOO_93 | 5173 | 5970 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 99.62 | 100.00 | WP_063844771.1 |
| OFHCKFOO_16 | 41113 | 42315 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.25 | 100.00 | WP_063853729.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| OFHCKFOO_1 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_2 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_3 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_4 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_5 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_6 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_7 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_8 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_9 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_10 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_11 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_12 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_13 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_14 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_15 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_16 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_17 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_18 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_19 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_20 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_21 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_22 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_23 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_24 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_25 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_26 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_27 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_28 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_29 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_30 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_31 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_32 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_33 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_34 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_35 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_36 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_37 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_38 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_39 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_40 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_41 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_42 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_43 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_44 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_45 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_46 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_47 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_48 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_49 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_50 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_51 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_53 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_54 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_55 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_56 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_57 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_58 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_59 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_61 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_62 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_63 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_64 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_65 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_66 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_67 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_69 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_72 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_74 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_77 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_80 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_83 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_84 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_85 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_86 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_88 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_89 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_91 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_92 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_93 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_94 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_95 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_96 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_97 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_99 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_102 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_103 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_107 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_110 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_112 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_113 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_114 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_115 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_116 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_118 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_119 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_121 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_122 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_123 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_124 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_125 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_126 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_128 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_129 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_130 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_131 | 0.0 | 1.0 | 0.0 |
| OFHCKFOO_132 | 1.0 | 0.0 | 1.0 |
| OFHCKFOO_133 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| OFHCKFOO_37 | 265433 | 284111 | False | Siphoviridae | VOG4783, |
| OFHCKFOO_61 | 27036 | 33998 | False | Unknown | VOG1047, |
Phigaro v2.4.0 (Database: Jan. 2024 release)