Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 1 | 0 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCAIHDPG_94 | 165592 | 166956 | tet(Q) | ARO:3000191 | tet(Q) | 96.24 | 69.10 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| JCAIHDPG_94 | 165032 | 166956 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.95 | 99.95 | X58717 |
| JCAIHDPG_87 | 89106 | 90006 | cepA-44 | Unknown Beta-lactam | 99.34 | 99.78 | U05885 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| JCAIHDPG_94 | 165583 | 166956 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | INTERNAL_STOP | 99.13 | 71.45 | WP_004293868.1 |
| JCAIHDPG_87 | 89425 | 90003 | cepA | CepA family extended-spectrum class A beta-lactamase | PARTIALX | 96.89 | 64.33 | WP_032579291.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| JCAIHDPG_54 | 4728 | 5919 | bft-2 | 0.0 | BFT B. fragilis toxin, subtype 2 | Exotoxin | 99.75 | 99.92 | BAA77277 |
| JCAIHDPG_54 | 4728 | 5919 | bft-3 | 0.0 | BFT B. fragilis toxin, subtype 3 | Exotoxin | 96.82 | 99.92 | BAA77275 |
| JCAIHDPG_54 | 4728 | 5919 | bft-1 | 0.0 | BFT B. fragilis toxin, subtype 1 | Exotoxin | 94.89 | 99.92 | BAA77276 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JCAIHDPG_11 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_12 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_13 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_14 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_15 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_16 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_17 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_18 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_20 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_21 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_22 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_23 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_24 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_25 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_26 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_27 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_29 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_30 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_31 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_32 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_33 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_34 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_35 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_36 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_37 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_38 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_39 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_40 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_41 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_42 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_43 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_44 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_45 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_46 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_47 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_48 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_49 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_50 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_51 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_52 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_53 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_54 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_55 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_56 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_57 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_58 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_59 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_60 | 1.0 | 0.0 | 1.0 |
| JCAIHDPG_61 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_62 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_63 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_64 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_65 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_66 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_67 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_68 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_69 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_70 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_71 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_72 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_73 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_74 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_75 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_76 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_77 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_78 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_79 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_80 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_81 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_82 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_83 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_84 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_85 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_86 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_87 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_88 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_89 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_90 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_91 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_92 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_93 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_94 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_95 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_96 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_97 | 0.0 | 1.0 | 0.0 |
| JCAIHDPG_98 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JCAIHDPG_90 | 174503 | 182890 | False | Siphoviridae | VOG7238, |
Phigaro v2.4.0 (Database: Jan. 2024 release)