Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 1 | 7 | 7.35 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29390 | clbA | ARO:3002814 | clbA | 97.42 | 100.00 | CP006845.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29376 | cfr(B) | Chloramphenicol, Florfenicol, Clindamycin, Lincomycin, Linezolid, Dalfopristin, Pristinamycin IIA, Virginiamycin M, Tiamulin | 87.64 | 98.67 | KR610408 |
| ELOIDCJJ_2 | 128470 | 129846 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 87.15 | 100.00 | X08034 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_3 | 28341 | 29384 | clbA | 23S rRNA (adenine(2503)-C(8))-methyltransferase ClbA | BLASTX | 97.70 | 99.71 | WP_012116915.1 |
| ELOIDCJJ_2 | 128476 | 129846 | tet(L) | tetracycline efflux MFS transporter Tet(L) | BLASTX | 86.43 | 99.78 | WP_003242953.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_11 | 74943 | 76124 | capB | 0.0 | Capsule | Immune modulation | 82.46 | 99.66 | NP_391471 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| ELOIDCJJ_21 | 34818 | 35954 | tufA | 0.0 | elongation factor Tu | 86.54 | 95.69 | AHM69299 |
| ELOIDCJJ_35 | 19034 | 19903 | pdxS | 1.77e-152 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 84.83 | 98.31 | ACE61268 |
| ELOIDCJJ_1 | 386621 | 387397 | CodY | 5.09e-125 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| ELOIDCJJ_31 | 10378 | 10770 | spxA1 | 9.94e-71 | redox-responsive transcription factor | 83.21 | 100.00 | AAF21893 |
| ELOIDCJJ_27 | 49885 | 50082 | CspA | 2.94e-32 | cold shock protein | 90.91 | 100.00 | CAA62903 |
| ELOIDCJJ_4 | 21199 | 21393 | CspD | 3.98e-28 | cold shock protein | 80.00 | 98.48 | CAC99957 |
| ELOIDCJJ_4 | 21199 | 21396 | CspB | 8.24e-28 | cold shock protein | 80.30 | 100.00 | CAD00094 |
| ELOIDCJJ_27 | 49885 | 50079 | CspR | 3.85e-27 | cold shock protein | 80.00 | 98.48 | AAO82613 |
| ELOIDCJJ_12 | 47760 | 46888 | lipA (SAUSA300_0829) | 3.01e-163 | lipoic acid synthetase | 80.82 | 95.41 | ABD22039 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| ELOIDCJJ_1 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_2 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_3 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_4 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_5 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_6 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_7 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_8 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_9 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_10 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_11 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_12 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_13 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_14 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_15 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_16 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_17 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_18 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_19 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_20 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_21 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_22 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_23 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_24 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_25 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_26 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_27 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_28 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_29 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_30 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_31 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_32 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_33 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_34 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_35 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_36 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_37 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_38 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_39 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_40 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_41 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_42 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_43 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_44 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_45 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_46 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_47 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_48 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_49 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_50 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_51 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_52 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_53 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_54 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_55 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_56 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_57 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_58 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_59 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_60 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_61 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_62 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_63 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_64 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_65 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_66 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_67 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_68 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_69 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_70 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_71 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_72 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_73 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_74 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_75 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_76 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_77 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_78 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_79 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_80 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_81 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_82 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_83 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_84 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_85 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_86 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_87 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_88 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_89 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_90 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_91 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_92 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_94 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_95 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_96 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_97 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_98 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_99 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_100 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_101 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_102 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_103 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_104 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_105 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_106 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_107 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_108 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_109 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_110 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_111 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_112 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_113 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_114 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_115 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_116 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_117 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_118 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_119 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_120 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_121 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_122 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_125 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_126 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_127 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_128 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_129 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_130 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_131 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_132 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_133 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_134 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_135 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_136 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_137 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_138 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_139 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_140 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_141 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_142 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_143 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_144 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_146 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_147 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_149 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_150 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_152 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_154 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_155 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_156 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_157 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_158 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_159 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_160 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_161 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_162 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_163 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_164 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_165 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_166 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_167 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_168 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_169 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_170 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_171 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_172 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_173 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_174 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_175 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_176 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_177 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_178 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_179 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_180 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_181 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_182 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_183 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_184 | 1.0 | 0.0 | 1.0 |
| ELOIDCJJ_185 | 0.0 | 1.0 | 0.0 |
| ELOIDCJJ_186 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| ELOIDCJJ_1 | 4597 | 10451 | False | Myoviridae | VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390 |
| ELOIDCJJ_44 | 6548 | 15893 | False | Siphoviridae | VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749 |
Phigaro v2.4.0 (Database: Jan. 2024 release)