Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 1 | 0 | 0 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPDHAKOO_19 | 138234 | 140159 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| EPDHAKOO_19 | 138234 | 140159 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| EPDHAKOO_19 | 138234 | 140156 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| EPDHAKOO_2 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_4 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_5 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_7 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_9 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_10 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_11 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_13 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_15 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_16 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_17 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_18 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_19 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_20 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_24 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_25 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_27 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_28 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_29 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_30 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_33 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_34 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_36 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_38 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_39 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_40 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_43 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_44 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_46 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_47 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_50 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_51 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_53 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_55 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_56 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_57 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_58 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_63 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_64 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_68 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_69 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_71 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_76 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_77 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_78 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_79 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_84 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_85 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_86 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_87 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_89 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_96 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_97 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_99 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_101 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_103 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_104 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_106 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_107 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_109 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_112 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_113 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_116 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_117 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_118 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_119 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_121 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_122 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_123 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_124 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_125 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_126 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_127 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_128 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_129 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_130 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_131 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_132 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_133 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_134 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_135 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_136 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_137 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_138 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_139 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_140 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_141 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_143 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_144 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_145 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_146 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_147 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_148 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_149 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_150 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_151 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_152 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_153 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_154 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_155 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_156 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_157 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_158 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_162 | 1.0 | 0.0 | 1.0 |
| EPDHAKOO_163 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_164 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_166 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_167 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_168 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_169 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_172 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_173 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_174 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_175 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_176 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_177 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_178 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_179 | 0.0 | 1.0 | 0.0 |
| EPDHAKOO_181 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| EPDHAKOO_34 | 21132 | 27731 | False | Unknown | VOG5023, |
| EPDHAKOO_38 | 21132 | 27731 | False | Unknown | VOG5023, |
| EPDHAKOO_69 | 9915 | 18858 | False | Siphoviridae | VOG4841, |
| EPDHAKOO_124 | 107066 | 113665 | False | Unknown | VOG0572, |
| EPDHAKOO_125 | 10838 | 17886 | False | Unknown | VOG0572, |
Phigaro v2.4.0 (Database: Jan. 2024 release)