Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 3 | 0 | 1 | 3.16 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNJGOOFC_127 | 2122 | 4047 | tet(Q) | ARO:3000191 | tet(Q) | 89.08 | 97.56 | Z21523.1 |
| DNJGOOFC_105 | 1939 | 2904 | CfxA2 | ARO:3003002 | CfxA2 | 100.00 | 100.00 | AF118110.1 |
| DNJGOOFC_127 | 1035 | 1835 | ErmF | ARO:3000498 | ErmF | 98.50 | 100.00 | M17124.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DNJGOOFC_105 | 1939 | 2904 | cfxA3 | Ampicillin | 99.90 | 100.00 | AF472622 |
| DNJGOOFC_105 | 1939 | 2904 | cfxA4 | Unknown Beta-lactam | 99.90 | 100.00 | AY769933 |
| DNJGOOFC_105 | 1939 | 2904 | cfxA5 | Unknown Beta-lactam | 99.90 | 100.00 | AY769934 |
| DNJGOOFC_105 | 1939 | 2904 | cfxA | Cefoxitin, Ampicillin | 99.90 | 100.00 | U38243 |
| DNJGOOFC_127 | 1035 | 1835 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| DNJGOOFC_127 | 2122 | 4047 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 90.45 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DNJGOOFC_105 | 1942 | 2904 | cfxA | CfxA family broad-spectrum class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_004339683.1 |
| DNJGOOFC_127 | 1035 | 1832 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| DNJGOOFC_127 | 2122 | 4044 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 89.55 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DNJGOOFC_164 | 71961 | 73541 | GroEL | 0.0 | folding of newly synthesized proteins, preventing misfolding and aggregation | 86.91 | 96.70 | BAA04222 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DNJGOOFC_1 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_2 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_3 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_4 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_5 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_6 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_7 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_8 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_9 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_10 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_11 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_12 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_13 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_14 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_15 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_17 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_18 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_19 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_20 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_21 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_22 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_23 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_25 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_26 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_27 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_28 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_29 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_30 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_31 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_33 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_34 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_35 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_36 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_38 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_39 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_41 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_42 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_44 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_48 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_50 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_51 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_52 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_53 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_54 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_55 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_57 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_58 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_59 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_60 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_62 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_63 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_64 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_65 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_66 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_67 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_68 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_69 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_71 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_74 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_76 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_77 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_78 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_80 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_83 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_84 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_85 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_86 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_87 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_88 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_89 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_92 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_93 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_94 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_95 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_96 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_98 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_99 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_103 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_104 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_105 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_107 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_110 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_111 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_112 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_113 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_115 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_116 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_118 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_120 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_121 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_123 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_124 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_127 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_129 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_131 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_132 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_135 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_136 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_137 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_138 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_139 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_140 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_141 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_142 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_144 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_147 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_148 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_149 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_150 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_151 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_152 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_153 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_154 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_155 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_156 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_157 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_160 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_162 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_163 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_164 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_165 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_166 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_167 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_168 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_170 | 0.0 | 1.0 | 0.0 |
| DNJGOOFC_171 | 1.0 | 0.0 | 1.0 |
| DNJGOOFC_172 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DNJGOOFC_157 | 137796 | 144740 | False | Unknown | VOG6823, |
Phigaro v2.4.0 (Database: Jan. 2024 release)