Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 2 | 0 | 0 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPCIOHLB_179 | 377341 | 379266 | tet(Q) | ARO:3000191 | tet(Q) | 96.41 | 97.56 | Z21523.1 |
| HPCIOHLB_179 | 256174 | 257064 | CblA-1 | ARO:3002999 | CblA-1 | 100.00 | 100.00 | GQ343019.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| HPCIOHLB_179 | 377341 | 379266 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 99.84 | 100.00 | L33696 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| HPCIOHLB_179 | 256174 | 257061 | cblA | CblA family class A beta-lactamase | EXACTX | 100.00 | 100.00 | WP_005827792.1 |
| HPCIOHLB_179 | 377344 | 379266 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | BLASTX | 99.53 | 100.00 | WP_063856407.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| HPCIOHLB_1 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_3 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_4 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_5 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_7 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_9 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_10 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_11 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_13 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_14 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_15 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_16 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_17 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_18 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_19 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_21 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_22 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_23 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_24 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_25 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_26 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_28 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_30 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_31 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_32 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_33 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_35 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_38 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_39 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_40 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_41 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_42 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_43 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_44 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_46 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_48 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_49 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_50 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_52 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_53 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_54 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_56 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_57 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_58 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_60 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_61 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_62 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_63 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_64 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_65 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_66 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_67 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_68 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_69 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_72 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_73 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_75 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_76 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_77 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_78 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_81 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_82 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_84 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_85 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_86 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_87 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_88 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_90 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_91 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_92 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_93 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_94 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_95 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_96 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_97 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_98 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_100 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_101 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_105 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_107 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_108 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_109 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_110 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_112 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_113 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_114 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_115 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_118 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_119 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_120 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_121 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_123 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_124 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_125 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_126 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_127 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_128 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_129 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_130 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_132 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_133 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_137 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_138 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_139 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_140 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_141 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_142 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_143 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_144 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_145 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_146 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_147 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_148 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_149 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_150 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_152 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_153 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_154 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_156 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_157 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_159 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_160 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_161 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_162 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_163 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_164 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_165 | 1.0 | 0.0 | 1.0 |
| HPCIOHLB_166 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_167 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_168 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_169 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_170 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_171 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_172 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_173 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_174 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_175 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_176 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_177 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_178 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_179 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_180 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_181 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_182 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_183 | 0.0 | 1.0 | 0.0 |
| HPCIOHLB_184 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| HPCIOHLB_176 | 66559 | 70932 | True | Siphoviridae | VOG6282, |
Phigaro v2.4.0 (Database: Jan. 2024 release)