Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 2 | 2.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| PPMEMEBD_3 | 104779 | 105483 | WalR | 5.56e-112 | transcriptional regulatory protein | 83.40 | 100.00 | EPH95667 |
| PPMEMEBD_1 | 238129 | 238326 | CspR | 3.94e-32 | cold shock protein | 87.88 | 100.00 | AAO82613 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| PPMEMEBD_1 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_2 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_3 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_4 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_5 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_6 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_7 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_8 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_9 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_10 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_11 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_12 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_13 | 0.0 | 1.0 | 0.0 |
| PPMEMEBD_15 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| PPMEMEBD_1 | 640566 | 666105 | False | Siphoviridae | VOG0275, VOG6495, VOG9859, VOG8294, VOG0703, VOG0753, VOG7896, VOG6455, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG4568, VOG4556, VOG0202, VOG1886, VOG4581, VOG0195, VOG6972 |
| PPMEMEBD_3 | 24555 | 35067 | False | Siphoviridae | VOG0204, VOG4568, VOG4556, VOG5051, VOG4544, VOG4581, VOG4841, VOG0205, VOG4609, VOG4632, VOG1581 |
| PPMEMEBD_12 | 1854 | 38007 | False | Siphoviridae | VOG1637, VOG4705, VOG4599, VOG4605, VOG6163, VOG0660, VOG0209, VOG4586, VOG0207, VOG0205, VOG9975, VOG4553, VOG4573, VOG4556, VOG1886, VOG4581, VOG4841, VOG1345, VOG4549, VOG10904, VOG4570, VOG0198, VOG3643, VOG0152, VOG4567, VOG9741, VOG9759, VOG4813, VOG4693, VOG7735, VOG0025, VOG4799, VOG0226, VOG0322, VOG0321, VOG3642, VOG4967, VOG10867, VOG0181, VOG4552, VOG10917, VOG11003, VOG6495 |
Phigaro v2.4.0 (Database: Jan. 2024 release)