Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 13 | 10 | 4 | 16.88 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBADEAHK_1 | 2539704 | 2540558 | aadK | ARO:3002627 | aadK | 97.54 | 100.00 | AL009126.1 |
| DBADEAHK_1 | 2520538 | 2521740 | blt | ARO:3003006 | blt | 99.75 | 100.00 | L32599.1 |
| DBADEAHK_1 | 2348535 | 2349704 | bmr | ARO:3003007 | bmr | 99.74 | 100.00 | M33768.1 |
| DBADEAHK_1 | 1322660 | 1322977 | ykkD | ARO:3003064 | ykkD | 99.05 | 100.00 | AL009126.1 |
| DBADEAHK_1 | 1322322 | 1322660 | ykkC | ARO:3003063 | ykkC | 100.00 | 100.00 | AL009126.1 |
| DBADEAHK_1 | 859300 | 861870 | Bacillus subtilis mprF | ARO:3003324 | Bsub_mprF | 99.88 | 100.00 | AL009126.3 |
| DBADEAHK_1 | 327046 | 327639 | tmrB | ARO:3003059 | tmrB | 98.48 | 100.00 | AL009126.3 |
| DBADEAHK_1 | 276489 | 277922 | lmrB | ARO:3002813 | lmrB | 99.58 | 100.00 | JYFL01000006.1 |
| DBADEAHK_1 | 263676 | 264596 | mphK | ARO:3004541 | mphK | 98.37 | 100.00 | CP010314.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| DBADEAHK_1 | 4012915 | 4014291 | tet(L) | Doxycycline, Tetracycline, Minocycline, Tigecycline, Doxycycline, Tetracycline | 100.00 | 100.00 | X08034 |
| DBADEAHK_1 | 2539706 | 2540558 | aadK | Streptomycin | 98.12 | 99.77 | M26879 |
| DBADEAHK_1 | 263676 | 264596 | mph(K) | Spiramycin, Telithromycin | 97.94 | 100.00 | NC_000964 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| DBADEAHK_1 | 4012918 | 4014291 | tet(L) | tetracycline efflux MFS transporter Tet(L) | EXACTX | 100.00 | 100.00 | WP_003242953.1 |
| DBADEAHK_1 | 263676 | 264593 | mphK | macrolide 2'-phosphotransferase MphK | BLASTX | 98.37 | 100.00 | WP_003246254.1 |
| DBADEAHK_1 | 568077 | 569561 | vmlR | ABC-F type ribosomal protection protein VmlR | BLASTX | 97.58 | 90.31 | WP_003234144.1 |
| DBADEAHK_1 | 2539707 | 2540558 | aadK | aminoglycoside 6-adenylyltransferase AadK | BLASTX | 97.54 | 100.00 | WP_003229862.1 |
| DBADEAHK_1 | 4010444 | 4010962 | satA | streptothricin N-acetyltransferase SatA | BLASTX | 90.17 | 100.00 | WP_003242546.1 |
| DBADEAHK_1 | 2044846 | 2047443 | rphC | rifamycin-inactivating phosphotransferase RphC | BLASTX | 81.40 | 100.00 | WP_087347987.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| DBADEAHK_1 | 2149367 | 2150008 | hlyIII | 0.0 | Hemolysin III | Exotoxin | 100.00 | 100.00 | NP_390062 |
| DBADEAHK_1 | 3518795 | 3519976 | capB | 0.0 | Capsule | Immune modulation | 99.75 | 100.00 | NP_391471 |
| DBADEAHK_1 | 3517170 | 3518312 | capA | 0.0 | Capsule | Immune modulation | 99.39 | 100.00 | NP_391469 |
| DBADEAHK_1 | 3100701 | 3101639 | dhbB | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.36 | 100.00 | NP_391077 |
| DBADEAHK_1 | 3518331 | 3518780 | capC | 0.0 | Capsule | Immune modulation | 99.33 | 100.00 | NP_391470 |
| DBADEAHK_1 | 3104537 | 3105322 | dhbA | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.24 | 100.00 | NP_391080 |
| DBADEAHK_1 | 3103315 | 3104511 | dhbC | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.17 | 100.00 | NP_391079 |
| DBADEAHK_1 | 1994765 | 1996528 | dep/capD | 0.0 | Capsule | Immune modulation | 99.15 | 100.00 | NP_389723 |
| DBADEAHK_1 | 3093545 | 3100681 | dhbF | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 99.05 | 100.00 | NP_391076 |
| DBADEAHK_1 | 3101667 | 3103286 | dhbE | 0.0 | Bacillibactin | Nutritional/Metabolic factor | 98.52 | 100.00 | NP_391078 |
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| DBADEAHK_1 | 132779 | 133915 | tufA | 0.0 | elongation factor Tu | 84.96 | 95.69 | AHM69299 |
| DBADEAHK_1 | 19070 | 19939 | pdxS | 3.00e-149 | encodes the putative pyridoxal 5'-phosphate synthase subunit PdxS | 83.79 | 98.31 | ACE61268 |
| DBADEAHK_1 | 1632802 | 1633578 | CodY | 3.28e-124 | nutrient-responsive regulator | 81.08 | 100.00 | ACJ80679 |
| DBADEAHK_1 | 3357442 | 3358011 | ClpP | 8.22e-98 | part of proteolytic complex | 80.53 | 97.44 | BAB94595 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| DBADEAHK_1 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| DBADEAHK_1 | 1265012 | 1292836 | False | Myoviridae | VOG4602, VOG9667, VOG3490, VOG0189, VOG4861, VOG5447, VOG0796, VOG10227, VOG4773, VOG4685, VOG0749, VOG3890, VOG3891, VOG3892, VOG6163, VOG4865, VOG4885, VOG3894, VOG4550, VOG4691, VOG4862, VOG7718, VOG3390, VOG4705 |
| DBADEAHK_1 | 1836253 | 1862550 | False | Siphoviridae | VOG2545, VOG4581, VOG1886, VOG4556, VOG4568, VOG4553, VOG5361, VOG0204, VOG4589, VOG0539, VOG0704, VOG4586, VOG0541, VOG5910, VOG6163, VOG0801, VOG4619, VOG4626, VOG3390, VOG4705, VOG4612, VOG3390, VOG7896, VOG0641 |
Phigaro v2.4.0 (Database: Jan. 2024 release)