Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 0 | 0 | 1 | 1.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| No hit found | |||||||
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| JJMKIFCH_13 | 27168 | 26974 | CspA | 9.64e-29 | cold shock protein | 84.61 | 98.48 | CAA62903 |
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| JJMKIFCH_1 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_2 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_3 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_4 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_5 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_6 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_7 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_8 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_9 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_10 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_11 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_12 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_13 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_14 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_15 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_16 | 0.0 | 1.0 | 0.0 |
| JJMKIFCH_17 | 0.0 | 1.0 | 0.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| JJMKIFCH_4 | 291025 | 315777 | False | Siphoviridae | VOG4693, VOG4039, VOG0198, VOG3477, VOG8453, VOG4571, VOG3699, VOG4544, VOG0720, VOG4564, VOG4555, VOG1329, VOG4713, VOG0704, VOG0725, VOG0817, VOG0801, VOG3462, VOG1224 |
Phigaro v2.4.0 (Database: Jan. 2024 release)