Probiotic potential risk score
| ARGs | VFs | PGs | PPRS |
|---|---|---|---|
| 9 | 0 | 0 | 9.00 |
PPRS is classified as low-risk (≤4), medium-risk (4-6), and high-risk (≥6).
Antibiotic resistance genes
Comprehensive Antibiotic Resistance Database (CARD)
| Query ID | Begin | End | ARO name | ARO accession | CARD name | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNFPBBHK_1 | 3617114 | 3617938 | OXA-347 | ARO:3001777 | OXA-347 | 100.00 | 100.00 | JN086160.1 |
| NNFPBBHK_1 | 3616057 | 3616911 | ErmF | ARO:3000498 | ErmF | 98.50 | 106.77 | M17124.1 |
| NNFPBBHK_1 | 3613192 | 3614055 | aadS | ARO:3004683 | aadS | 100.00 | 100.00 | M72415.1 |
| NNFPBBHK_1 | 3611765 | 3612991 | EreD | ARO:3004608 | EreD | 95.34 | 100.00 | KP265721.1 |
| NNFPBBHK_1 | 2770976 | 2772950 | tet(Q) | ARO:3000191 | tet(Q) | 100.00 | 97.56 | Z21523.1 |
| NNFPBBHK_1 | 2433409 | 2434614 | Mef(En2) | ARO:3004659 | Mef(En2) | 99.50 | 100.00 | AF251288.1 |
| NNFPBBHK_1 | 2345926 | 2346828 | CepA-49 | ARO:3006226 | CepA-49 | 100.00 | 100.00 | NG_050387.1 |
| NNFPBBHK_2 | 7772 | 8281 | nimA | ARO:3007104 | nimA | 96.91 | 96.02 | X71444.1 |
RGI v6.0.3 (Database: CARD Variants v4.0.2, Nov. 2023 release)
ResFinder
| Query ID | Begin | End | Resistance gene | Phenotype | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|
| NNFPBBHK_1 | 3617114 | 3617938 | blaOXA-347 | Unknown Beta-lactam | 100.00 | 100.00 | ACWG01000053 |
| NNFPBBHK_1 | 2345926 | 2346828 | cepA-49 | Unknown Beta-lactam | 100.00 | 100.00 | U05886 |
| NNFPBBHK_1 | 2770976 | 2772901 | tet(Q) | Doxycycline, Tetracycline, Minocycline | 100.00 | 100.00 | Z21523 |
| NNFPBBHK_1 | 3616111 | 3616911 | erm(F) | Erythromycin, Lincomycin, Clindamycin, Quinupristin, Pristinamycin IA, Virginiamycin S | 99.50 | 100.00 | M17808 |
| NNFPBBHK_2 | 7793 | 8306 | nimA | Metronidazole | 98.64 | 96.61 | X71444 |
| NNFPBBHK_1 | 3611765 | 3612991 | ere(D) | Erythromycin | 96.66 | 100.00 | KP265721 |
ResFinder v4.6.0 (Database: resfinder_db, Aug. 2024 release)
AMRFinderPlus
| Query ID | Begin | End | Gene symbol | Sequence name | Method | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| NNFPBBHK_1 | 3613195 | 3614055 | aadS | aminoglycoside 6-adenylyltransferase AadS | EXACTX | 100.00 | 100.00 | WP_003013318.1 |
| NNFPBBHK_1 | 3617117 | 3617938 | blaOXA-347 | class D beta-lactamase OXA-347 | ALLELEX | 100.00 | 100.00 | WP_004295324.1 |
| NNFPBBHK_1 | 2345929 | 2346828 | cepA-49 | extended-spectrum class A beta-lactamase CepA-49 | ALLELEX | 100.00 | 100.00 | WP_008659027.1 |
| NNFPBBHK_1 | 2434639 | 2435148 | lnu(AN2) | lincosamide nucleotidyltransferase Lnu(AN2) | EXACTX | 100.00 | 100.00 | WP_004308783.1 |
| NNFPBBHK_1 | 2770979 | 2772901 | tet(Q) | tetracycline resistance ribosomal protection protein Tet(Q) | EXACTX | 100.00 | 100.00 | WP_002560998.1 |
| NNFPBBHK_1 | 2433409 | 2434611 | mef(En2) | macrolide efflux MFS transporter Mef(En2) | BLASTX | 99.50 | 100.00 | WP_063853729.1 |
| NNFPBBHK_1 | 3616111 | 3616908 | erm(F) | 23S rRNA (adenine(2058)-N(6))-methyltransferase Erm(F) | BLASTX | 98.87 | 100.00 | WP_002682030.1 |
| NNFPBBHK_2 | 7793 | 8275 | nimA | 5-nitroimidazole reductase NimA | BLASTX | 97.52 | 91.48 | WP_032488596.1 |
| NNFPBBHK_1 | 3611765 | 3612988 | ere(D) | EreD family erythromycin esterase | BLASTX | 95.34 | 100.00 | WP_015345560.1 |
AMRFinderPlus v4.0.3 (Database: Oct. 2024 release)
Virulence factors
Virulence Factor Database (VFDB)
| Query ID | qstart | qend | Gene name | e-value | VF name | VF category | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|---|
| No hit found | |||||||||
BLASTN v2.16.0 (Database: VFDB, Dec. 2024 release)
VirulenceFinder
| Query ID | Begin | End | Database | Virulence factor | Protein function | Identity | Coverage | Accession no. |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
VirulenceFinder v2.0. 4 (Database: virulencefinder_db, Feb . 2024 release)
Pathogenic genes
PHI-base
| Query ID | qstart | qend | Gene name | e-value | Function | Identity | Coverage | Gene ID |
|---|---|---|---|---|---|---|---|---|
| No hit found | ||||||||
BLASTX v2.16.0 (Database: PHI base v4.16, May. 2024 release)
Plasmid
PlasmidFinder
| Query ID | Begin | End | Plasmid | Query / Template | Identity | Accession no. |
|---|---|---|---|---|---|---|
| No hit found | ||||||
PlasmidFinder v 2.1.6 (Database: plasmidfinder_db v 2.2.0 , Nov. 2024 release)
PlasmidHunter
| Query ID | Prediction | Chromosome | Plasmid |
|---|---|---|---|
| NNFPBBHK_1 | 0.0 | 1.0 | 0.0 |
| NNFPBBHK_2 | 1.0 | 0.0 | 1.0 |
| NNFPBBHK_3 | 1.0 | 0.0 | 1.0 |
PlasmidHunter v 1.4.5 (Database: May. 2024 release)
Prophage
Phigaro
| Query ID | Begin | End | Transposable | Taxonomy | pVOGs |
|---|---|---|---|---|---|
| NNFPBBHK_1 | 2238696 | 2254390 | False | Siphoviridae | VOG0275, |
Phigaro v2.4.0 (Database: Jan. 2024 release)